Theobroma cacao (cacao): 18611304
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Entry
18611304 CDS
T02994
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18611304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18611304
Spliceosome [BR:
tcc03041
]
Complex B
Other components
Prp19-related factors
18611304
Complex C
18611304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
RRM_3
zf-CCCH
zf-CCCH_3
zf-CCCH_4
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
18611304
NCBI-ProteinID:
XP_007047560
UniProt:
A0AB32VN91
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All DBs
Position
1:3628509..3632624
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AA seq
495 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSLNSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDEGIKTLYVGGLDKRVT
EQDLRDNFYAHGEIETIKMVLDKACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK
PQAPRPESETSEGGMQQVAVAHSGMLPRAVISQQQNQFQPSGPGVQDQPQPMQYFNIPPP
PQLDRAFYPSMDPQRMGALVPSHDGENKSGSEKPQQGQHYPYQAMPPPPGQYPHQLYPPY
GYMQPMPPYQQYPYHPAMPPPQAPPATQQYQHSGPPRPPPPVSGPSTSTPPVSSSSGSAP
PVPGPSADASGSSHQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcacacagattgttaagagatcacgaggcagatggttgggaacgctccgacttccct
atcatttgtgaatcatgccttggtgacaatccatatgttcgaatgaccaaagcagattat
gataaggagtgcaagatttgtacaagaccatttacggtctttaggtggaggcctggtcgt
gatgcaaggtataagaaaactgaggtttgtcagacatgcagtaagttgaaaaatgtttgt
caagtctgccttctagaccttgaatatggattgccagttcaagttcgggatactgctctt
agtttaaattccaatgatgccattccaaagagtgatgtgaatagagagtattttgctgag
gagcatgaccgcagggccagagctggtttagattacgaatcctcatatgggaaggtacgg
ccaaatgacactattctgaagcttcagagaacaacaccatactacaaaagaaaccgagca
catatttgcagtttctatgtgcggggtgaatgtacaagaggtgctgagtgcccttatagg
catgagatgccagtaactggggagttgtcacagcaaaatataaaagaccgttactatggg
gtgaatgatcctgtggcactaaagctactcaacaaggctggtgaaatgccttctttggaa
cctcctgaggatgagggcattaaaaccctttacgtgggcggccttgataaaagggttaca
gagcaagatttaagggacaatttttatgcccatggtgaaatcgaaacgataaagatggtg
cttgacaaagcatgtgcctttgtaacttacacaaccagagaaggagctgagaaggctgca
gaagagctttctaacaagctagtcataaagggtctcaggctgaagcttatgtggggtaag
ccccaggcaccaagaccggagtcagaaacctcagagggaggcatgcagcaggtagcagtg
gctcatagtggaatgttgccccgggctgtaatatctcagcagcagaaccaatttcagcca
tctgggcctggcgtgcaggaccaaccccaacctatgcagtatttcaatatcccacctcca
cctcagctggatagagccttttatccatcaatggatcctcaaaggatgggtgccctggtt
ccatctcatgatggggagaacaaatctggatcagaaaaaccgcaacaagggcaacattat
ccctatcaagctatgccaccaccgcctgggcaatatcctcatcagctttatccaccatat
gggtacatgcaaccaatgccaccttatcagcagtatccatatcatccggcaatgcctcca
cctcaggctccaccagcaactcagcaatatcagcattctgggccaccaaggcctccacct
cctgtgagtggaccttcaacaagcacaccaccagtgtcttcttcatcaggttctgcacct
ccggttccagggccatctgctgatgcatctggatcatctcatcagtga
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