Theobroma cacao (cacao): 18611632
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Entry
18611632 CDS
T02994
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
tcc03015
mRNA surveillance pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18611632
09122 Translation
03013 Nucleocytoplasmic transport
18611632
03015 mRNA surveillance pathway
18611632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18611632
03041 Spliceosome [BR:
tcc03041
]
18611632
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18611632
Spliceosome [BR:
tcc03041
]
Complex C
Other components
EJC/TREX
18611632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
18611632
NCBI-ProteinID:
XP_017984998
UniProt:
A0AB32WZJ2
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Position
1:5741765..5746396
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AA seq
808 aa
AA seq
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MSSRYPILDNKPIDQWRVTELKEELKRRKLTTRGLKEDLVKRLDEALRIERENAAKDADN
GFKSDPQPVVEEGIEKAEPVVAKTVKEVVHHGDSEIEKGSGVKFQVDINDSAAALGHGGV
QGRDILVEEEPVIQTATVQTKITVTETVVSEVELTGQDLQSSGQGENVNSNIEVEYEDPK
PQVENEGPKSEVENDDLKYQLESVGSKSQLENENLKPQRENVGSKAQLENDDPKPQLESV
GSKPLLENDDPKPQLDIEDSKPQLENEGLKAPHEDDVRDCSAPNNQVSEVSPILGFQVKS
DSISTDSVSINEKIELKDNIIADNVKLDLDVVKPEMVEPSSSNVVPVSGESHPMDVEEPL
ENKVSVDERDDKNVTNADMSKKNDSAEMGYSEKLNLDRSSGDDSMEEDVLDSKQIDSKCS
TEEMGEKSVKNELPILKEESPVDVVGDGLSADVENKSRSTVPVEKRKLHDQEAVGNNEPS
KRRKWNSDNVKVPERQGSNLTPTTTPKETTKPASLKRNFSRSDSTASEDTPKERVVPPSQ
KPLTTSLRIDRFLRPFTLKAVQELLGKTGTVTSFWMDHIKTHCFVTYSSVEEAIETRNAI
YNLQWPPNGGRLLVADFVDPQEVKMRLEAPPQTPTTPGTSGSIAPQAQSTSQPQPSPRQQ
VPRQQLPPPALPPPPPLSNPPPVRERLPLPPPPPEKLDPPIVTLDDLFRKTKATPRIYYL
PLSEEQVAAKRAARGRNVKQSAGVAFWKELFQPCGGKLSGDRFWFSEGCFGLSFKFHLAL
EPFELRALFISGLILLCSNLVFLLDLIW
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaggtatccaatacttgacaataaacctattgatcaatggagggttacagag
ttgaaagaagaacttaagaggcggaagttgacaactcggggcttgaaagaggatttggta
aaacggttggatgaagcacttcgaattgaaagggaaaatgctgcaaaggatgcagataat
ggttttaagtctgatccccagcctgtagttgaggaagggattgagaaagcagagccggtt
gttgctaagactgttaaagaggtcgtgcatcatggtgacagtgagattgagaaggggagt
ggggtgaagtttcaggttgacattaatgatagtgcagctgctttgggtcatggaggagtt
caaggaagggacatattggtggaagaggagcctgttattcaaaccgcaacagtgcagacc
aagataacagttactgagactgtggtatctgaggtagaattgactggacaggatttgcag
agctcaggacaaggggagaatgtgaattctaatatcgaagtggagtatgaggacccgaag
ccccaggtggagaatgagggtccaaagtctgaggtggagaatgatgatttaaagtaccag
ctagagagtgtgggttcaaagtctcagctggagaatgaaaatctgaagccccagagggag
aatgtgggttcaaaggctcagctggagaatgatgatccaaagccccagctggagagtgtg
ggttcaaagcctctgctggagaatgatgatccgaagccccagctggacattgaggattca
aagccccagctggagaatgagggtttgaaggctccacatgaggatgacgtgcgtgactgt
tctgctccaaacaaccaggtatctgaggtcagccctattttagggtttcaagtaaaatct
gattctatttctactgattctgtgtcaattaatgaaaagattgaactaaaggataatata
attgctgataatgtcaaattagacctagatgttgttaagccggagatggtggaaccatca
tccagcaatgttgtcccagttagtggtgaatcgcatccaatggatgttgaagagccactt
gagaacaaggtgtctgttgatgagagagatgacaagaatgttacaaatgcagacatgagc
aagaaaaatgatagtgcagagatggggtactcagaaaaattaaatttagatagaagttca
ggtgatgactctatggaggaggatgtgcttgatagtaaacaaattgactcaaaatgtagc
actgaggaaatgggagagaagagtgtgaaaaatgaactgcctattttgaaggaggagagt
cctgttgatgttgtaggagatggtttatctgcagatgttgagaataagagccgttcaact
gtccctgtcgagaaaagaaagcttcatgatcaggaagctgtagggaacaatgagccttca
aaaaggcgcaaatggaactctgacaatgttaaagttccagagcggcaaggctctaatctt
acgcccaccaccacacctaaagaaactactaagcctgcttctctgaaacgtaacttctct
agatcagactcaacagctagtgaagatacacccaaggaacgagttgttccgccgtcacag
aagcctctgaccacttccctcagaattgatcgttttttgcgcccttttaccttaaaagct
gtgcaagaacttttagggaaaactggaactgttacgagcttctggatggaccacattaag
acccattgctttgttacttattcatctgtggaagaagccatagagacacgaaatgccatc
tataacctgcaatggccacccaatggtggacgtctattggtggctgactttgttgatcct
caggaagtgaaaatgcggctggaggctccacctcagactccaactactcctgggacttct
ggttctattgcgcctcaagcccaatctacttctcagcctcagccctcacctcgtcaacag
gttcctagacagcagcttccacctcctgctcttccaccaccaccgcccttgtctaaccca
ccaccggttagagaacggctccctcttccaccaccacctccagagaaactagatcctcct
attgtcactctggatgacctgtttcggaaaaccaaagcaactcctaggatctactatttg
cctctgtcagaagaacaagttgcagcaaagcgagcagcacgtggcagaaacgtgaagcag
tctgcaggtgttgctttttggaaggaattgttccagccatgcggagggaagttgtccggt
gatagattttggttttctgaaggctgctttgggctgagttttaaatttcatttagcatta
gaacccttcgaactgagagctctctttattagtggattgattctcctttgctcgaatttg
gttttcctactggacctaatttggtag
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