Theobroma cacao (cacao): 18611881
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Entry
18611881 CDS
T02994
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
18611881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcc04131
]
18611881
Membrane trafficking [BR:
tcc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
18611881
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
TPR_MalT
AlaDh_PNT_N
zf-HC5HC2H_2
TPR_Vps41
DUF2175
Motif
Other DBs
NCBI-GeneID:
18611881
NCBI-ProteinID:
XP_017980906
UniProt:
A0AB32WT45
LinkDB
All DBs
Position
1:7487930..7494212
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AA seq
998 aa
AA seq
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MVHSAYDYFELLNDCPTKIDAIESYGLKLLLGCSDGSLRIYGPDSSGADRSPPSDQHALR
KEPYALERTVEGFSKKALLSMQVLQSRELLLSLSESIAFHRLPNLETIAVITKAKGANVY
SWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMAWCGENICLGIRKEYMI
LNAMNGALSEVFSSGKIAPPLVVALPSGELILGKENIGVFVDQNGKLLQADRICWSEAPT
VVVIEKPYAIALFPRRVEIRSLRVPYPLIQTIVLQNARHLIKSNNAVVVALNNSVYGLFP
VPLGAQIVQLTASGNFEEALALCKLLPPEDASLRAAKEGSIHIRYAHYLFDNGCYEEAME
HFLASQVDITYVLSLYPSIVLPKTTAIPEPEKLMDLSLDASQLSRGSSGLSDDLETLLPQ
LSESDENAALEFKKMSHNTLMALIKFLQKKRYSIVEKAAAEGTEEVVLDAVGDHFSSTRF
KKSNKGRGTIPINSAAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQ
KGNHYTALLELYRSNSMHREALILLHRLVEESKSNQLQAELIQKFSPEAIIEYLKPLRGT
DPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQHAPNMQTRYLELMLAMNENG
ISGNLQNEMVQIYLAEVLEWYSELSAQQIWDEKAYSPTRKKLLSALESISGYNPEALLRR
LPPDALFEERAILLGKMNQHELALSLYVHKLHVPELALAYCDRVYDSAVRQPLVKSSSNI
YLTLLQIYLNPQKTTKNFEKRITNLVSSPNTSTPKFGSAASIKAKGGRKKIASIEGAEDM
RISPGNTDSGRSDGDAEESSEEGGSAIMLDQVFDLLSRRWDRINGAQALKLLPRETKLQN
LLPFLGPLLKKSSEAYRNFSVIKSLRQSENLQVKDELYNQRKAVVKISSDSMCSLCNKKI
GTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSPLRKR
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagcgcctatgattacttcgagctcctcaatgattgtcccactaaaatcgac
gccatcgaatcctacggcttgaagctcctcctcggctgctccgatggctcccttcgaatc
tatggtccagattcctctggtgccgaccggtctccgccgtccgatcagcacgcgctgcga
aaggagccctacgctctggagagaaccgttgaagggttttcaaagaaggctctcctttca
atgcaagtattgcaatcgagagagctactcttatctctctctgagtcgatcgcttttcat
cggctcccgaacttggaaaccattgctgtgatcaccaaagctaaaggcgctaatgtctac
tcttgggacgaccgtagaggcttcctctgctttgctaggcaaaagagagtctgtattttc
aggcacgatggagggcgagggtttgtggaggtgaaagattttggtgtaccagatacagtg
aagtcaatggcgtggtgtggtgagaacatatgtctaggtattagaaaggaatacatgata
ttaaatgccatgaatggtgcattgtcggaggtgttttcttccgggaagatagcaccacct
ttggttgttgctcttccctctggggaacttatacttgggaaggaaaatattggcgtcttt
gtggatcaaaatggaaagcttcttcaagctgataggatttgttggtcagaagctcctact
gttgttgtcatcgagaagccatatgcaatagctctgtttccaagacgtgttgagattcgc
tctcttcgagttccatatccattgatacagacgattgtcctccaaaatgctcgtcatctt
ataaaaagtaacaatgccgtagttgtagcattaaacaattctgtttatgggctcttccct
gttcctcttggtgctcagattgtccaattaacagcgtctggaaattttgaggaagcattg
gccttgtgtaagctgcttcctccagaagatgcaagccttagagctgcgaaggaggggtca
attcatataagatatgctcattatctttttgacaatgggtgctacgaggaggcaatggag
cactttttggcatctcaagtagatattacctatgtgctttctttgtatccatccattgtt
cttcccaaaacaactgcaattccagagcccgagaagttaatggatctttctctggatgct
tcacaactttcaagagggtcatctggtctgtcagatgatctggaaaccttgcttccacaa
ctatcagaatctgacgagaatgcagcacttgagttcaagaaaatgagccacaatactctc
atggctcttattaagttcctacagaagaagagatacagtattgtagagaaggctgctgct
gagggaacagaagaggtagttttagatgctgttggagatcattttagttcgactaggttt
aagaagtcaaacaaggggcgtggtaccattccgattaactcagctgctagggagatggca
gcaatactggatacagccctcctccaagctctgcttcttactggacaatcttcagcagct
ttggaattgctgaaaggccttaattactgtgatgtaaaaatctgtgaggagattcttcaa
aaagggaatcattatactgctttgttagaactttatagaagtaactcaatgcaccgtgaa
gctctaattcttctacatcgattagtagaagagtcaaaatcaaaccaattgcaagctgag
ctcatccaaaagttcagtcctgaagcaattattgaatatctcaagcctcttcgtggcacc
gatcccatgcttgtccttgagttctcaatgcttgttcttgaaagctgtccaacacaaacc
attgagctttttttgtctggaaatattccagcagacttggtcaactcttatctgaagcag
catgctccaaacatgcaaaccaggtatttagaacttatgcttgcgatgaatgaaaatggg
atctcagggaacctgcaaaatgaaatggtacaaatctatctcgcagaagtacttgaatgg
tattcagaactaagtgctcaacagatatgggatgagaaggcttattctcccacgaggaag
aaattattgtctgcattggaaagcatctcaggatacaatccagaggctttgttgagacgt
cttcctccagatgctctattcgaagagcgtgcaattttgttgggaaaaatgaaccaacat
gagcttgcattatcactatatgttcataagctccatgtacctgaactggccctggcctat
tgtgatcgggtttacgattctgcggttcgtcaaccattggttaaatcttctagtaatata
tacctcactcttttacaaatctatctgaatcctcaaaaaacaaccaagaactttgaaaag
agaattacaaatttggtatcatccccaaatacaagcaccccaaagtttggttcagcagct
tcaattaaagctaaaggaggacgtaagaaaattgcctcaatagaaggtgcagaggatatg
cgtattagtcccggcaacaccgatagtggtaggagtgacggtgatgctgaagaatccagt
gaggaaggaggttctgctatcatgcttgatcaggtatttgatcttttgagccgaaggtgg
gatagaatcaatggagctcaggcactcaaactcttaccaagggagactaaactacagaac
ttgcttccatttctgggacctcttttgaaaaaatccagtgaagcatacaggaacttctct
gttatcaagagcttgaggcagagtgagaacctacaggtgaaagatgaactctacaaccaa
cgaaaagctgtggtgaagatctctagtgatagtatgtgctctctctgcaacaagaaaata
ggaacaagcgtatttgctgtctatccaaacgggaaaacactggtacactttgtttgcttt
agagattcgcaaagtatgaaagcagtagccaaaggctcaccgctaaggaagcgatga
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