Theobroma cacao (cacao): 18612206
Help
Entry
18612206 CDS
T02994
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18612206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18612206
03012 Translation factors [BR:
tcc03012
]
18612206
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18612206
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18612206
Translation factors [BR:
tcc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18612206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
Ank_2
HA2_N
nSTAND3
ResIII
AAA_23
ATPase
AAA_19
Ank_5
AAA_22
Ank_3
AAA_7
ABC_tran
T2SSE
Rad17
Motif
Other DBs
NCBI-GeneID:
18612206
NCBI-ProteinID:
XP_007048931
UniProt:
A0AB32VQ46
LinkDB
All DBs
Position
1:10202923..10215570
Genome browser
AA seq
1207 aa
AA seq
DB search
MGKKKSVAESTRIQLAQTLEKFRESKDEVYTFDSTLSNKERALVHRACRKMGMKSKSSGR
GSQRRISVYKIRGKVDNMKGMESLTNMTFSGGAQVVLQDLFTHYPPDDGELGEKLVGKYS
GKTAKVRKKKDDIFSKPLMSDTEIAEKVKTLASRIEKDPNLRQINEEMSKLPIASFRDVI
TSTVESHQVVLISGETGCGKTTQVPQYLLDYMWGKGKACKVVCTQPRRISATSVSERISN
ERGENVGNDVGYKIRLERKGGRHSSIVFCTNGVLLRVLVSNSRSKREDISDMTHIIMDEI
HERDCFCDFMLAIIRDILPSYPHLRLVLMSATLDAERFSQYFGGCPIIHVPGFTYPVKAF
YLEDVLSILKSADNNHLISASASVPNEDPELTEEDKIALDEAILACTTDEFDPLLELVSV
EGGSKVHNYQHSLTGLTPLMVIAGKGRVADVCMLLSFGVDCHLRSKDGKRALEWAEQENQ
QEAAEIIKKHMQSLLSNSGEQQQLLDKYIEAVDPEIIDVVLIEQLLRKICIDTNEGAILV
FLPGWEDINRTREKLLANPLFKDSSRFIIISLHSMVPSAEQKKVFKRPPIGCRKIVLSTN
IAESSITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQREGRAGRCQPGTCY
HLYSKLRAASMPDFQVPEIKRMPIEELCLQVKLLDPNCKVENFLQKTLDPPVSEAIRNAV
SVLQDIGAFSYDEELTELGEKLGYLPVHPLTSKMLFFAILMNCLDPALTLACASDFRDPF
VLPMFPNDKKKAAAAREELASLYGGQSDQLAVIAAFECWKHAKERGQEGRFCSKYFVSSS
TMNMLFGMRKQLQAELMRFGFIPDDVSSCSLNAHDPGILHAVLVAGLYPMVGRLLPLRQG
KRFVVETAGGSKVRLHSHSINSKLSLKQSNDCPLIMYDEITRGDGGMHIRNCTVIGPLPL
LLLATEIAVAPAKGNDDNEDDDDDDEDDDGSDDADECDTDGDEMLMVSKSGGNEEKVMSS
PDNSVMVVVDRWLSFRSTAFDVAQIYCLRERLSAAILSKVLHPHQVLTPVLGASIYAIAC
ILSYDGLSGISTRAESVDSLTLKVRATEIDKPLPGRRGSGPNTNRLPVDRSSYWKAEVHA
YEAVTDGTEPSSCNKQAPVMSVGTSLQQASSQGPISVASGSGVSKLQGQGSREESCKRRR
GSGKRSK
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaaaagcgtcgctgaatccacgaggatccaattggcccaaacacttgag
aagtttcgtgaatcgaaagatgaagtgtatacctttgattccaccctttcaaacaaagaa
cgagcactcgtgcacagggcatgccggaaaatgggtatgaaatccaaaagttctgggcgt
gggagccagagacgtatctctgtctacaaaattagagggaaagtcgacaatatgaaaggg
atggagagtctcacgaatatgacattttcagggggggcacaagtggttttgcaggactta
tttacacattatccacctgatgatggagagcttggagagaaattagttggaaaatatagt
ggaaaaactgctaaagtacgaaagaagaaagatgatattttctccaagccattgatgagt
gacactgagattgcagagaaggttaaaacacttgcatctaggatagagaaggatcctaat
ttgagacagattaatgaagagatgtcgaagctgccaattgcttcatttagggatgtgatt
acgtccacagtagaatctcatcaggttgtgctcatttctggtgagactggatgtggaaag
accacacaggtcccgcaatatctattggactatatgtggggaaaaggcaaggcttgtaaa
gtagtgtgtactcagcctcggcgtatatcagctacatcagtgtctgagagaatctctaat
gaaagaggagaaaatgttgggaatgatgttggatacaagattcgcttggaaaggaaaggt
ggtcggcactcatcgattgtcttctgcacgaatggggtattattgagggtgctggtttcg
aacagtaggtcgaagagagaagacatttctgacatgactcacattattatggatgaaatt
catgaaagggactgcttctgtgatttcatgctggcaattatcagggacatacttccttca
tatcctcacctacggctggtattaatgagtgctactcttgatgctgaacgcttttcgcag
tattttggtggttgcccaattatccatgtccctgggtttacatatcctgtaaaagctttc
tatttggaggatgtgctttccatcttgaaatctgcagacaataatcatcttatttcagct
agtgcaagtgtcccaaatgaagacccagaattaacagaagaagataagattgcattagat
gaagctattttggcttgtacaactgatgagtttgatccccttctcgagttggtttctgtt
gaaggagggtcaaaggttcataattatcagcattctttgactggactaacacctttaatg
gtgattgctggaaagggtagggtggcggatgtttgcatgctcctctcatttggtgtggac
tgccatctaaggtccaaggatgggaaaagagctttggagtgggccgagcaggaaaaccag
caggaagctgctgaaataataaaaaaacatatgcaaagtctcctttccaattctggggaa
caacaacagttactggataagtatatagaggcagttgatccagaaattattgatgttgtt
cttattgagcagttattaaggaagatatgcatcgatacaaatgaaggagctatccttgtt
ttccttcctgggtgggaggatataaatagaacccgagagaaattacttgccaaccccctt
ttcaaagattcttccagatttattataatatctctgcactcaatggttccatctgcagag
caaaagaaggtttttaaacgtccacccattggttgccgcaaaattgtcctttcaaccaat
attgctgaaagttccattacgattgatgacgttgtctatgttatagatagtggtcgaatg
aaagagaaaagctatgatccttataataatgtatcaactcttcagtcttcttgggtctcc
aaagcaaatgccaagcaacgagaggggcgtgcaggccgatgtcagcctggaacttgttat
catctttattcaaagcttcgagcagcttctatgccagactttcaagttccagaaattaag
agaatgccgattgaggagctttgtttgcaggtgaagttgcttgacccaaattgcaaagta
gagaatttcttgcaaaagacattggaccctcctgtttctgaagctatacgtaatgcagtt
agtgttcttcaagatattggggctttctcatatgatgaggaactgactgaacttggagag
aagcttggttatcttcctgttcatccattgacaagcaagatgcttttctttgccatattg
atgaactgccttgatccggctttaaccctagcatgtgcctcagacttcagggatccattt
gtacttcccatgtttcctaacgataagaagaaggctgccgctgctagggaagagcttgca
tcattgtatggtgggcaaagtgatcagctggcagtcatagctgcttttgagtgctggaag
catgcaaaagaaaggggtcaagaaggacgtttttgttcgaaatacttcgtctcttcaagc
accatgaatatgctgtttggcatgcggaagcagctccaggctgaactgatgcggtttggg
tttattccagatgatgtctcaagttgtagtctgaatgcacatgatcctgggatacttcac
gcagtccttgtggctggtttgtatccaatggtggggaggttgctccctttaagacagggt
aaacgatttgttgtagagactgctggtggcagtaaagttcggttacactctcactcaatt
aattctaagttatcacttaagcaatccaacgattgccctttgataatgtatgatgaaata
acccgtggagatgggggtatgcacattaggaactgtactgtcattgggccacttccattg
ttactgcttgcaacagagatcgctgtggctcctgctaaagggaatgatgacaacgaagat
gatgatgatgacgacgaagatgatgatggaagtgatgatgctgatgagtgtgacaccgat
ggagatgaaatgttgatggttagtaagtcaggtggaaatgaagagaaggtcatgtcctct
cctgataattctgttatggtagttgttgatcggtggctttcattcagatcaacagcattt
gatgttgctcaaatctactgcttgagagagcgattatctgcagcaatcttatccaaggtt
ttgcatccacaccaagttcttactcctgttcttggggcttctatatatgcaatagcctgc
attctgtcttatgatgggctatcaggtatctcaacccgagcagaatctgtggattcactg
actttgaaggtacgtgctactgagattgacaaacccttgccagggaggagaggttcgggt
ccaaatacaaataggttaccagttgacaggtcaagttactggaaagctgaagtccatgca
tatgaggctgtaacagatggaactgagccctcaagctgcaacaaacaggcaccagtaatg
tcagttgggacgagcctacagcaggcttcatcccaaggccccatttcagttgcttctggt
tcaggcgtgtctaaattacagggtcagggttccagggaagagtcttgcaagcggcgacgt
gggagcgggaagaggtcgaaatag
DBGET
integrated database retrieval system
