Theobroma cacao (cacao): 18612249
Help
Entry
18612249 CDS
T02994
Name
(RefSeq) uncharacterized LOC18612249
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18612249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18612249
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18612249
mRNA degradation factors
5'-3' decay
Decapping complex
18612249
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
18612249
NCBI-ProteinID:
XP_017984985
UniProt:
A0AB32X1Z8
LinkDB
All DBs
Position
1:10784933..10792995
Genome browser
AA seq
798 aa
AA seq
DB search
MDRSDGKLPNNFSQTSSGNALFDASQYEFFGQNAMEEVELGGLDDGEQDAPVFASAEDDE
YHLFDRGEVVGLGSLSDMDDLASTFAKLNRVVTGPRNPGVIGDRSGSFSRESSSTADWAQ
DGEYVNWLDQHMFDAEDAQEGKRWSSQPQPSSARVAESKPLYRTSSYPQQQPQPHHFSSE
PIVGPKSTFTSFPPPGSRGQQSSPAHLKIPALTSGSQSPFSAASLSPLSNSSLHLAGLSH
GLHYSGNMSQLTSPGLSFSSRSQNHWVNHSGLLHGDHAGLLQSMLQHQIPHQNGLISPQL
ISPQQQRLHHSVQPSLAHFAALQSQLYNAHPPSHKMMLGLGDHRDQRTKSSQRNRQSMRF
SQQSSDIGSQKSESGLVQFRSKYMTAEEIESILKMQHAATHSNDPYVDDYYHQACLAKRS
SGSRAKHHFCPSHLKELHSRSRNSGEQHLHLHVDALGKVPLSSIRRPRPLLEVDPPLGSG
DGGSEQKTEKPLEQEPMLAARITIEDGLCLLLDVDDIDRLIQFSQPQDGGAQLRRRRQIL
LEGMAASLQLVDPLSKGGHAVNCAPKDDIVFLRLVSLPKGRKLLTRFLQLLIPGSELIRI
VCMAIFRHLRILFGGLSADTGAAETTTNLAKTVSMCVNGMDLRALSACLVAVVCSSEQPP
LRPLGSPAGDGASVILKSVLERATQLLSHPSGNCSMPNYAFWRASFDEFFALLTKYCVSK
YETIMQSMHTQTQPTTEVIGSEAIRREMPCELLRASLPHTNEAQRKLLMDFSQRSVPMNG
SNSHAGNTSQINSESVRG
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggatagatccgatggcaaacttcccaacaacttctctcaaacttcctcaggtaatgcg
ctttttgatgcatcccaatacgaattttttggtcaaaatgctatggaagaagtggagttg
gggggtctagatgatggtgaacaggatgctcctgtgtttgcatccgctgaagatgatgag
taccatttgtttgatagaggagaggttgtaggtttaggttctttatctgacatggatgat
ctggctagtacttttgcaaagttgaatagggttgttacaggaccaagaaatccaggagtt
attggtgatagatctggatctttttcaagggaaagttcatctactgctgactgggctcaa
gatggagagtatgtaaactggttggatcagcatatgtttgatgcagaagatgctcaagaa
ggcaagagatggtcctcacagccacaaccttcttctgctcgtgttgccgaatcaaagcct
ttatatagaacttcttcatatccccagcagcaaccacagccacatcacttctcaagtgaa
ccaattgttggccccaaatcaaccttcacatctttccctcctcctggtagcagaggccag
cagtcttcacctgcccacctaaaaattcctgctcttaccagtggatctcagtcacccttc
tctgcagccagcctctctcctttgtccaactccagtcttcatctggctggtctatctcat
ggattgcattacagtggtaatatgtcccagttaacctctcctggcctatcttttagtagc
aggtcccaaaatcactgggttaaccactctgggctattacatggagatcatgctggcctt
ttacagagtatgttgcaacatcaaatacctcatcaaaatggcctaatctccccacagtta
atttcaccacaacagcagagactgcaccattcagttcaaccatctttggcacattttgca
gcattgcagtctcagctgtataatgcccatcctccatctcataaaatgatgcttggactg
ggcgatcatagggatcaacgaacaaaatcatcacaaagaaataggcagagcatgcgtttt
tctcagcaaagctctgatattggtagccagaaaagtgagagtgggttggtgcaattcaga
tccaagtatatgactgctgaagagatagagagtattcttaagatgcagcatgctgccacg
catagcaatgatccctatgtagatgattattaccaccaagcttgtcttgccaaaagatct
tctggatccagggctaaacatcatttttgcccatctcacctgaaggaattacattctcga
tctcgtaacagtggagagcagcatttgcatctccatgttgatgcacttgggaaggtaccc
ctctcttccattcgtaggcctcgcccgctgcttgaagttgatcctcccttaggttcaggt
gatggaggttctgaacagaaaactgagaagcccctggagcaggaaccaatgcttgctgct
agaataaccattgaagatggtctttgtcttcttcttgatgtagatgatattgatcggctc
atacaatttagtcaaccccaagatggtggggctcagctcagacggaggcggcagatcctg
cttgaaggtatggcagcatcacttcagcttgttgatccacttagcaaaggtgggcatgca
gttaactgtgctcccaaagatgacatcgtgttcctaagattagtctctcttccgaagggc
cgtaagctcctcaccaggttccttcagcttctcatccctggaagtgagcttattcgaata
gtgtgcatggctattttccgtcacttgagaatcttgtttggtggtctttctgctgatacg
ggagcagccgagacaactaccaatcttgcaaagacagtttctatgtgtgttaatggtatg
gatcttcgtgcacttagtgcttgccttgttgcagttgtttgttcttctgagcagccacca
cttcggccccttggaagccctgctggggatggtgcttctgttattttaaaatcagtcctt
gaaagggccacacaacttttaagtcatccttctggaaattgcagtatgcctaattatgct
ttctggagggcttcgtttgatgaattcttcgctcttcttaccaagtattgtgtgagtaaa
tatgagactataatgcagtcaatgcatacccagactcagccaaccacggaagtaattggt
tcagaggctataaggcgtgaaatgccttgtgagcttctacgtgctagtcttcctcacaca
aatgaagcccagaggaagcttttaatggacttttctcagcgttctgtgcccatgaatgga
tccaattcgcatgctgggaatactagccaaataaactctgaatcagtgaggggttaa
DBGET
integrated database retrieval system
