Theobroma cacao (cacao): 18612308
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Entry
18612308 CDS
T02994
Name
(RefSeq) cell differentiation protein RCD1 homolog
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18612308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18612308
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18612308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
18612308
NCBI-ProteinID:
XP_007049102
UniProt:
A0AB32VN68
A0A061DKH4
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Position
1:11633307..11638695
Genome browser
AA seq
324 aa
AA seq
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MANVPEESPLGGPSARGAGSSAAAPTNNPSSAPHDGNLSEITRLIRGLNSEKTRKESLDL
LCKNYLKVCDDLAILLWNSFGTMRALVEEVTSVYRPLSSTSLSERVAAQVCNAIALLQAV
AAHPETRMPFVKAYIPVYLQAFLNTMNREKPYDSLRLSSLVVIGSLVKVDDAEVVDFLLV
SQTFPSCLRCMEVGSTLSKTVATFIIHRILLNEQGLHYCLVPADRFFALNNALAIMVERL
GEEEEGHRPRLLRNIISCYLRLSDNDRARAYFSGYIPPKLVDDTYIGILERDQVAHSNLQ
KLISKLKASQRSRTQPTGHLSGPL
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgtcccagaagaatccccattgggaggcccatcagctagaggagcgggttcg
agtgcggcggctccaaccaacaacccttcttctgctcctcatgatggaaacctctctgag
atcactcgtttgattcgagggcttaattctgaaaaaacccgaaaggagtctcttgacctt
ctttgcaagaattatttgaaagtttgtgacgatttggcaatcttgttatggaattctttc
ggtaccatgagagcacttgtagaggaagtaacttcagtttaccgtccactatcatccacc
agcctttcagaaagggtagcagctcaagtttgcaatgctattgcgcttcttcaggctgta
gctgctcaccccgaaacaaggatgccatttgtcaaagcttacataccagtctatcttcag
gccttcctgaacactatgaaccgtgaaaagccctatgattctctaaggcttagcagctta
gttgtcatcggttccctagtgaaggttgatgatgcagaagtggttgatttccttcttgtt
tctcaaacatttcctagttgcctgcgctgcatggaggttggcagcacattatcaaaaaca
gttgccacatttataattcacaggattttactaaatgagcaagggctgcactattgtttg
gttcctgcggatcgatttttcgcgctaaacaatgcattggcaataatggttgaaaggctt
ggtgaagaagaagaagggcatcgcccacgactgctaagaaacatcatttcttgttatctc
aggctgtcagacaacgacagggcacgtgcctatttctcaggttacattcctcccaagtta
gtagatgacacatatattggtatccttgaacgtgaccaggtagcccatagtaatctacaa
aaattgatttccaaattaaaagccagccagaggtctagaacacaaccaaccggccactta
tcggggcctttatga
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