Theobroma cacao (cacao): 18612361 Help Entry 18612361          CDS       T02994                                  Name (RefSeq) E3 ubiquitin-protein ligase COP1   KO K10143   E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] Organism tcc  Theobroma cacao (cacao) Pathway tcc04120   Ubiquitin mediated proteolysis tcc04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:tcc00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     18612361  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     18612361  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:tcc04121]     18612361 Enzymes [BR:tcc01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      18612361 Ubiquitin system [BR:tcc04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     18612361   Multi subunit type E3    Cul4 complex     Target recognizing subunit (DCAF)      18612361 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_WDR19_1st Beta-prop_HPS5 WD40_MABP1-WDR62_2nd EIF3I zf-C3HC4 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_RFWD3 Beta-prop_DCAF4 zf-C3HC4_3 WD40_MABP1-WDR62_1st zf-RING_2 WD40_like zf-C3HC4_4 zf-RING_UBOX Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st Beta-prop_DCAF12 U-box zf-RING_5 zf-RING_10 Beta-prop_SCAP DUF1664 Beta-prop_IFT122_2nd zf-Nse YpoC YbfN FlgT_N Motif Other DBs NCBI-GeneID:  18612361 NCBI-ProteinID:  XP_007049188 UniProt:  A0AB32VPV8 LinkDB All DBs Position 1:complement(12054772..12070650) Genome browser AA seq 694 aa AA seqDB search MEEFSTGTEPRVPAVKPDSNPSSFEEVPPLLEAATDVTAAAAVEVAEVDKDLSCPICMQI IKDAFLTSCGHSFCYMCIITHLRNKSDCPCCSQFLTNNQLFPNFLLDKLLKKTSSRQISK TASPVEQFRQALQQGYEVSIKELDNLLSLLAEKKRKMEQEEAERNMQILLDFLNCLRKQK VDELNEVQSDLQFIKEDINSVERHRIDLYRARDRYSVKLRMLGDDSGTGKPWPSSIDKNS SGIVSSSLNVRGGMSAGYLQNKKIDGKAQVSGHGPQRKDALSGADSQGFNQSGLSIARKK RVHVQFNDLQECYLQKRRQSANQLHVKQESDKNVIHREGYNAGLADFQSVLSTFTRYSRL RVIAELRLGDIFHSANIVSSIEFNRDDELFATAGVSRRIKVFDFSMVLNDRADVHCPVVE MSTRSKLSCLSWNKYSKNHIASSDYEGIVTVWDVNTRQSLMEYEEHEKRAWSVDFSRTEP SMLVSGSDDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLR NISSPLHVFSGHKKAVSYVKFLSENELASASTDSTLRLWDVKESLPDLFHMVTRYHLVHL QLRTFRGHTNEKNFVGLTVNSEYIACGSEKNEVYVYHKEISKPVTWHRFGSQDMDDADED AGSHFISAVCWKSDSPTMLTANSQGTIKVLVLAA NT seq 2085 nt NT seq  +upstreamnt  +downstreamnt atggaggaattctcaactggcaccgagccgcgagtgccggcggtgaagccggactctaac ccatcttccttcgaggaagttccgccgctgctcgaagcagccactgacgtcaccgccgcc gctgctgttgaagttgcggaggtggacaaggacttgtcgtgtccgatttgtatgcagata attaaggacgcctttctaacgtcttgcggccacagcttttgctacatgtgtattattact catcttcgaaacaagagcgattgcccttgttgctctcaatttctcactaataatcagctt ttccctaactttttgctcgataagctattgaagaagacttcatctcgtcaaatatcaaaa actgcatcccctgtggaacagtttcgtcaggcattacagcagggttatgaagtttcaatt aaggaactggacaacctcttgtccctcctcgcagagaagaagagaaaaatggaacaggaa gaagctgagagaaatatgcaaatactgctggatttcttaaactgcttgcggaaacaaaaa gttgatgaactgaatgaggtacaatctgatctgcagtttattaaagaggatataaattct gtggaaagacatagaatagatttgtatcgtgcaagagataggtactctgtgaaattgcgg atgcttggagatgattctggcacaggaaagccatggccttcatccatagacaagaacagt agtggaattgtctctagttcccttaatgtcagaggagggatgtctgcaggatatcttcaa aacaagaaaatagatggaaaggctcaggtgagtggccatggacctcagagaaaggatgcc ttaagtggagcagactcacaaggtttcaatcaatctggtctgtctattgcaagaaaaaag cgggttcatgtccagttcaatgacctacaagagtgttacctgcaaaagcgacgtcagtcg gcaaaccaactacatgttaaacaggaaagtgataaaaatgtcattcacagagagggttat aatgcaggtcttgcagattttcagtcagtgctgagtacttttactcggtacagtcgactt agagttattgcggaactgaggcttggggatatctttcattcagccaatatagtatcaagc atagaatttaatcgtgatgatgagttgtttgctactgctggagtgtctcggcgcattaag gtttttgatttctctatggtcctaaacgatcgagcagatgtacactgtcctgttgtggag atgtcaacacgttctaaacttagttgcttgagttggaacaagtattcaaagaatcatata gctagtagtgattatgagggaatagtaaccgtgtgggatgtaaatacccgtcagagtctg atggaatatgaagaacatgaaaaacgagcatggagtgttgatttctcacggacagaaccc tcaatgcttgtatctggtagtgatgattgcaaggtgaaagtttggtgcacaaagcaggaa gccagtgttcttaatattgacatgaaagccaatatatgttgcgtcaagtataatcctgga tctagcaattacattgcggttggttcagcagaccatcacatccattattatgatttaaga aacatcagtagtccactccatgtgttcagtgggcacaagaaagctgtctcgtatgtgaaa ttcttgtctgaaaatgaacttgcttctgcctctacagacagcacactaagattgtgggat gtaaaggagagcttgccggatcttttccatatggtaactcgatatcatctggtgcacttg cagcttcgtacttttagaggccatacaaatgagaaaaattttgtgggtctcactgtaaac agtgaatatatcgcatgtggcagtgaaaaaaatgaagtgtacgtgtaccataaggaaatc tcgaaacctgtaacatggcatagatttggttcacaggacatggatgatgcagatgaagac gctggatcgcacttcatcagtgcggtatgctggaagagtgatagccctaccatgctaact gctaacagtcagggaacgataaaagttctcgtccttgcggcttga

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