Theobroma cacao (cacao): 18612625
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Entry
18612625 CDS
T02994
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18612625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18612625
Enzymes [BR:
tcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
18612625
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18612625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
18612625
NCBI-ProteinID:
XP_007049584
UniProt:
A0AB32VQ99
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All DBs
Position
1:complement(14977513..14981003)
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AA seq
621 aa
AA seq
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MVALIPRRLFCTKISRNCHQHQLQWSVKQVTKSNFNDSLHDFHSHLSSSDFVAVSLQNTG
SFSAPWHRLSSFDCPETTYLKARRAADRFQLLQFAVCPFTISGSKVTAHPYNFHLFPRDE
LNIGMPSYSFSCQTSYLTAMAQQGFDFNACIYDGISYLSRAQELVAKVRMGNPIAIHHVM
KPSSTPPSVADTIFVERVKSRVKHWKKACADSSSRKTDEALVKSLRKLVLGGEQYGSRPC
MTIDVCSERQVQLVLEMLGEFSDDLVALKIPTKGGGTQAVRVVLTSSKEDKSLFERQLQN
VEEEQNKKIRGFREVIDLISASQKPVVSHNSLNDFSVIHSKFIGPLPLNMDEFLCSLRLV
FPHVFDVNHLMKEIGPLENVTNIPAAISYLKNRFFAPIDMEISHGALLNEGKIHGQTVLR
ICHLFAKLCSVLRITPGAIQSSDDNITSLLDGYANSFKSCSGSSQESVDGGIRIWTKSPR
KVGCKHLVFLWGFRDSLSAGMLKSLLQGSHDVFSEEFDVCLVDKSCAIVVFLQPNLSQAF
LDIMSSEGISGSLRELVSEGLRAAGYETYKRACGLGYWEADLASSLDKASATPDCFSQSG
SETNPSEVFWCNDLMINLGDL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggtggctttgataccaaggcgtctcttttgcactaaaatatcccggaattgtcatcag
catcagctccaatggagcgtaaagcaggttacaaaatccaacttcaacgactccctccac
gacttccactcccacctctcctcttccgacttcgtcgccgtttccctccagaacaccggc
tctttctcggccccttggcaccgcctctcctcctttgactgcccggaaaccacctacctc
aaggcccgacgagccgccgaccgcttccagctcctccagttcgctgtctgccccttcacc
atctctggctccaaagtcactgcccacccttataacttccacttgttccctagggatgaa
ttaaacattgggatgccctcttacagtttttcatgccaaacttcatatttgacagctatg
gctcaacaaggtttcgattttaacgcctgcatatatgatggtatatcatacttatccaga
gcacaagagttggtagcaaaagttcgaatgggcaatccaattgctatacatcatgttatg
aaaccttcttctaccccacctagcgttgctgatacgatattcgtagaaagggttaaatca
cgcgttaagcattggaaaaaagcatgtgcagactcctcaagcagaaagactgatgaggct
cttgtaaaatcgctgagaaaacttgtcttagggggtgaacagtatggatctagaccatgc
atgacaatagatgtttgcagtgaacgtcaagttcagcttgtgttagagatgttaggagag
ttctctgatgaccttgttgctttgaaaatcccaacaaagggtggaggaacccaggcagtt
cgtgttgttttgacaagttcaaaagaagacaagagtctttttgagaggcagcttcagaat
gtcgaagaggaacaaaacaagaaaataagaggctttcgagaggtgatcgatttgatatct
gcttcacagaaacctgttgtctcccacaattcccttaatgatttctcagttattcattcc
aaattcataggtccacttcctctcaacatggatgagttcctttgctctttgcgattagtt
ttcccccatgtatttgatgttaaccatctgatgaaggaaattggtcctttagaaaatgtg
accaacatacctgcagcgatatcttacctcaagaatcggttctttgcacccattgacatg
gaaatttctcacggagctttgttaaatgaaggcaagattcatgggcaaactgttttgaga
atatgtcatttgttcgcaaaactgtgctctgtactgagaatcactcctggtgctatccag
tctagtgatgacaatataacttctctccttgatgggtatgcaaattccttcaaatcatgt
tctggaagttctcaagaatcagttgatgggggtatcagaatttggacaaagagcccgaga
aaagtaggctgtaagcatttagttttcttgtggggatttagggatagcttatctgctgga
atgcttaagagcctgcttcaagggtcgcatgatgttttctctgaagaatttgacgtctgt
ttggttgataagagctgtgccattgtggttttcttgcaacctaatttatctcaagctttt
ctggatataatgagtagcgaaggaatcagtggatcattaagggaattggtttcagaaggc
ctaagggcagcaggttatgagacttacaagagggcatgtggtttgggttattgggaggca
gatttagcaagttccttagacaaagcctctgcaactcctgattgcttttctcaaagtggt
tctgaaacaaatccatcagaggttttctggtgcaatgacttgatgattaacttgggcgac
ctgtga
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