Theobroma cacao (cacao): 18613370
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Entry
18613370 CDS
T02994
Name
(RefSeq) DNA repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03022
Basal transcription factors
tcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18613370
09124 Replication and repair
03420 Nucleotide excision repair
18613370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18613370
03036 Chromosome and associated proteins [BR:
tcc03036
]
18613370
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18613370
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
18613370
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18613370
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
18613370
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18613370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
18613370
NCBI-ProteinID:
XP_007050637
UniProt:
A0AB32VR29
LinkDB
All DBs
Position
1:29848988..29856243
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYSYMIELKRALDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKPQSPIKLIYCTRTVHEMEKTLAELKLLHNYQIKHLGPQARILAIGLSSRKNLCVNPT
VLAAENRDSVDAGCRKLTASWVRAMAAENPNVPTCQFFENYEKAASAAVLPPGVYTLQDL
RAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPI
TDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVAS
ISSHAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSHS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLLEMVSVVPDGIVCFFV
SYSYMDGIINTWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLRDANLNLSTDMALHIAREF
LRKMAQPYDKTGGSDRKTLLSQEDLEKMGDGSVHEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaagacgtcacagtctacttcccctatgaccacatctaccctgaa
caatactcttacatgatcgaactgaagcgagccctagacgccaaaggtcattgccttctc
gaaatgcctacgggcaccggcaaaaccatcgccttactctctctcatcaccagctactct
ctctccaaaccccaaagccccatcaagctcatttactgtacccgcactgtccacgagatg
gaaaaaaccttggccgaattgaagcttttgcacaattaccagattaagcatttgggtcct
caagctaggattcttgccatcgggctttcttcgaggaagaatttgtgcgtgaacccgacg
gttttagcggccgagaatcgggattcggtggatgccggctgtaggaagctcacggcgagt
tgggttcgagccatggcggcggagaatcccaatgtgcctacatgtcagttttttgagaat
tatgagaaggccgcttctgcggccgtgttaccacccggtgtgtatacccttcaggacttg
agggcgtttgggaaggagaaagggtggtgtccgtactttttggcgagacatatggtacag
tttgcaaatgtggttgtttatagctatcagtatttgcttgatccaaaagtggctgggatt
atatccaaggaaatgcagaaggagtctgttgtggtgtttgatgaggcacataatattgac
aatgtgtgtatcgaagcacttagtgttagtgttagaagacagacacttgaaggagctacc
aggaatcttaatcggataagtcaagagattgataggttcaaggccactgatgcaagcaga
ctgcgttctgaatacaaccgacttgtagagggtttggcactgagaggaaacctacctatc
actgacacctggctttcaaatcctgccttgcctgatgatattctaaaggaagctgtgcct
ggaaatatccgtcgagctgagcactttttgcatgttctacgtagattggttcagtatctg
agagggcgactggaaactgacaatgttgagaaagaaagcccagttggctttgttgcctct
attagtagtcatgctggaattgaccagaaaacattgaagttttgttacgaccgtctgcat
tcactcatgttgactctagaaataactgacacagatgagttcttacacatccaaacaata
tgtgactttgccactcttataggcacttatgcccgtgggttttcaattattattgaacct
tttgatgaaaggatgccacatattccagatcctgtcttgcagcttagctgtcatgatgct
tctcttgccataaagcctgtgtttgaccgattccaatcagttgttattacatctggcacg
cttagcccgattgatctgtatccacgccttcttaatttccatccagttgttagtcatagc
tttacaatgtccctgacaagagattgcatatgtccaatggttctcacacgtggaagtgat
caacttcctgtcagtaccaaatttgatatgagaagcgatcctggtgttgtgaggaattat
ggcaagctcttgctggagatggtctctgtcgtccctgatggaattgtatgtttttttgtc
agttattcctacatggatggaattatcaacacttggaatgatagtggaattttgaaggag
ataatgcaacataagcttgtcttcattgagacgcaagatgttgtagaaaccacattggct
cttgacaattatcgcagggcttgtgattgtggaagaggtgcagtttttttttctgttgcc
aggggaaaggttgctgaaggtatagattttgatcgacattatggcagactggtaatcatg
tttggtgttcctttccagtatacgttgagcaaaatattgctggcaaggttggagtactta
cgagatacattccagataaaggaaggagattttcttacttttgatgccttgaggcaagct
gctcaatgtgtcggtcgagttatccgttcaaaggctgattatgggatgatgatatttgct
gataaaaggtacagccgacatgataagcgctcaaaattgccaagttggatactgtctcac
ttacgagatgcaaacctgaatttgagcactgacatggcactgcatatagcaagagagttc
cttagaaaaatggctcaaccttatgacaagaccggtggcagtgataggaagaccttactg
tcacaagaggatttggagaagatgggtgatggaagcgtgcatgaaatgttgtattaa
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integrated database retrieval system
