KEGG   Theobroma cacao (cacao): 18613544
Entry
18613544          CDS       T02994                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18613544
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18613544
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18613544
   03041 Spliceosome [BR:tcc03041]
    18613544
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18613544
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     18613544
Spliceosome [BR:tcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    18613544
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 18613544
NCBI-ProteinID: XP_007050889
UniProt: A0AB32VPS9
LinkDB
Position
1:31130250..31132959
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRQPKGVGRGLDD
GAKGAGGGRGRGGAGGKTSGNRGGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcctctttctcttctaaaaactgcacaggggcatcctatgctggtagaactgaaa
aatggggagacctataatgggcatttggtcaattgcgatacttggatgaacatccatctt
cgtgaagttatctgtacttctaaggatggagaccggttttggcgaatgcctgaatgctat
atccgtggaaatactatcaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaacaaagagtcgtgcagataggaagcctcctggtgtaggccgtggcagaggtaga
ggtagagaagatggtcctggtggaaggcaaccaaagggagttggccgtgggctagatgac
ggtgctaagggtgcaggtggaggccgaggcaggggtggtgcaggtggaaagaccagtgga
aatagaggtggtggccgaggtcgaggttga

DBGET integrated database retrieval system