Theobroma cacao (cacao): 18613736
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Entry
18613736 CDS
T02994
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18613736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18613736
03009 Ribosome biogenesis [BR:
tcc03009
]
18613736
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18613736
Spliceosome [BR:
tcc03041
]
Complex A
U2 snRNP components
U2 related factors
18613736
Complex B
18613736
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
18613736
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
90S particles
Helicases
18613736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
FtsK_SpoIIIE
AAA_7
AAA_30
AAA_33
TsaE
PhoH
NACHT
Motif
Other DBs
NCBI-GeneID:
18613736
NCBI-ProteinID:
XP_007051175
LinkDB
All DBs
Position
1:32160081..32163757
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSAKISKSNGGGLAAMNVNSSINKWNGRPYSQRYYEILEKRKT
LPVWQQKEEFLQVLKANQTLILVGETGSGKTTQIPQFVLDAVDIETPDKRRKMMIACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSGARTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKITKEAG
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANSVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG
NLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVAAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYENFVNHRALKAADNVRQQLVRIMARFNL
KLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLENFPQCEAKRVLEKLYKKKEKDREE
SRNRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagagaaaggtgagcttgttcgatgtggtggatgagacatcggct
aagatatcgaaatcgaacggcggagggttagcggcgatgaacgtcaacagctcgatcaac
aagtggaatggaaggccttattcgcaaaggtattacgagattttggagaagaggaaaacg
ctccctgtttggcaacagaaagaggagtttttgcaagtgttgaaagccaatcaaacgctt
atcttagtcggtgaaaccggtagcggtaaaaccactcagatacctcagtttgtattggac
gctgtggatatagaaactccggataagcggaggaaaatgatgattgcgtgtacacagcca
cgaagagtggctgctatgtctgtttcgcggcgtgttgctgaagaaatggatgtaactatt
ggagaggaggttggttatagtattcgttttgaagattgcagtggtgcaagaactgtttta
aagtatctaacagatggtatgcttttaagggaagcgatgactgatcctcttttagaaaga
tataaagttattattcttgatgaagcccatgaaagaactttggcgacagatgtgctattt
gggcttctgaaagaagtgttgaagaatcgacctgatcttaagctagttgttatgagtgca
acacttgaggcagaaaagtttcagggttattttaatggtgcaccacttatgaaggttcct
ggtaggcttcaccctgtggagatattctacactcaggaacctgaaagggattacttggag
gctgctattcggactgttgtgcagatacacatgtgtgaacctgctggtgacatccttgtt
ttcctgactggagaggaggagatagaagatgcatgtcgcaaaataactaaagaagctgga
aacatgggggatcaagtgggacctgttaaagtagtgcctttatattcaactcttccacca
gcaatgcaacagaagatttttgaacctgctccacctcctgtgaaggaggatggtcctcct
ggaaggaagattgtggtgtcaacaaacattgctgaaacttccttgactatagatgggatt
gtttatgttattgacccagggtttgctaaacaaaaggtttataacccacgagtgcgcgtt
gagtccttgttggtgtctccaatatcgaaggcaagtgcacaccaaagatctggtcgtgct
ggaagaactcaacctggaaaatgtttcaggctatacactgagaagagtttcaataatgat
ctgcagccacagacctatcctgaaatattaagatcaaaccttgcaaattcagttctcact
ttgaagaaactgggaattgatgatctggtgcattttgattttatggacccacctgcgcca
gagacattgatgcgggcattggaagtgttgaattacttgggagcattggatgatgatggg
aacttaacaaagttgggagagatcatgagtgaattccccttggatcctcaaatgtcaaag
atgctcgtagttagttccgaattcaactgttcaaatgagattctttcagttgctgccatg
ctttcagtacccaattgctttgtccggcctagggaggcacaaaaagctgcagatgaagca
aaagctaggtttgggcacattgatggggatcatcttacgcttttgaatgtgtaccatgct
tacaaacaaaacaacgaggattcatcttggtgctatgagaattttgtcaaccatagagca
ctgaaggctgctgataatgttagacaacagctggtgcgcataatggccaggtttaacctc
aagctctgcagcaccgatttcaacagccgtgactactacatcaacattagaaaggctatg
cttgctgggtattttatgcaggtagctcatctggagcgcactgggcactacttgacagtt
aaagacaaccaagtggtgcacttgcatccatcaaattgcctggatcacaagccagagtgg
gtcatctacaatgagtatgtcctgacaagccggaattttattcgtactgtgacagacatt
cgtggtgaatggttagttgatatagcaccgcattattatgatcttgaaaacttcccacag
tgtgaggccaagcgtgttcttgaaaagctttacaagaaaaaggagaaggatagagaggag
agtaggaacagaagatga
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