Theobroma cacao (cacao): 18613873
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Entry
18613873 CDS
T02994
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18613873
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18613873
microRNA pathway
RISC loading complex
18613873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
Helicase_C
DND1_DSRM
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
18613873
NCBI-ProteinID:
XP_017980214
UniProt:
A0AB32WR04
LinkDB
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Position
1:33009922..33021346
Genome browser
AA seq
1959 aa
AA seq
DB search
MEDEGRVSGSNGSSYWLDACEDISCDLINDFVDFDAPIVQESVDNASNQDFFGGIDHILD
SIKNGGGLPPVGNNNNNSSVVNGDGIQDSIVGDGWFQNEPSGVSKNLAENSVPPPNGVEK
NNLESKGQEKNCENSNWNLFDYSSKENGVHREDKSSCESRDRGLDSEEKCGKRARVNGSK
NDRQYPSRGQYYPRDRERCSARKRVRDWDEFDRRDREHVRRREHYNGSSRRDGRDRERRD
REPRGYWERDRSGSNEVVFRLGTWEADRYREGKAANDKSQECNGKIEKKVEQPKEKLLEE
QARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSICDDLQKQKKKMLSVFLVPKVP
LVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSII
KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDC
AIKIRNLESKLDSVVCTIKDRKELERHVPMPSEIVVEYDKAASLWSLHEQIKQMEVAVEE
AAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW
CACKVAQSFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVTDKDMSTAEAEN
KSAEDGTSPDEIEEGELPDSYVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE
DFRAIIFVERVVAALVLPKVFAELPSLNFIRCASLIGHNNSQEMRTGQMQDTIAKFRDGR
VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHA
AFLKNARNSEETLRKEAIERTDLSHLKDTSRLISVDMVPGTVYQVESTGAIVSLNSAVGL
IHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFEELEGPICSSMRLA
QQAVCLAACKKLHEMGAFTDMLLPDKGSGEEAEKVDQNDERDPLPGTARHREFYPEGVAN
ILQGEWILSGRDGTEDSKILHLYMYTIKCVNSGSSKDPFLNKVSDFAVLFGKELDAEVLS
MSVDLFIARAMITKASLVFRGSIDITESQLASLKSFHVRLMSIVLDVDVDPSTTPWDPAK
AYLFVPVVGDKFVDPVKEIDWDLVDNIITTDAWSNPLQRARPDVYLGTNERTLGGDRREY
GFGKLRHGIAFGHKPHPTYGIRGAVAPFDVVKATGVVPTRDVIEVQEGDLTKGKLIMADG
FLHAEDLVGKIVTAAHSGKRFYVDSIRYDMTAETSFPRKEGYLGPLEYSSYADYYKQKYG
VELRHKQQSLIRGRGVSYCKNLLSPRFEHLEGESEEALDKTYYVFLPPELCFVHPLSGSL
VRGAQRLPSIMRRVESMLLAVQLKRIIQFSVPASKILEALTAASCQETFCYERAELLGDA
YLKWVVSRFLFLKYPQKHEGQLTRMRQLMVSNMVLYQYALSKGLQSYIQADRFAPSRWAA
PGVLPVFDEDTKDGDTSLFDQEQATVDVIPVKEHSDGFEDEEMEDGEIESDSSSYRVLSS
KTLADVVEALIGIYYVEGGKNAANHLMKWIGIQVESDPDEMESMVTPSSVPESILRSVNF
DALEGALNIKFKNRALLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNL
PPGRLTDLRAAAVNNENFARVAVKHQLHVHLRHGSSALEKQIRDFVKEVQDELLKPGFNS
FGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWRVFQPLLHPMVTPETLPMHPVRELQ
ERCQQQAEGLEYKASRSGNLATVEVFIDGVQIGVAQNPQKKMAQKLAARNALAVLKEKET
AEAKENTEENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVKV
NTADRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKWYS
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgagggtagggtttctggtagtaatgggtcatcttactggctggatgcttgt
gaggacatttcatgtgaccttattaatgattttgttgattttgatgctcctatagttcaa
gaatcagttgacaatgcttccaatcaagatttctttggaggaattgatcacattcttgat
agcatcaagaacgggggtggccttcctccagtaggtaacaacaataataatagctccgtt
gtcaatggtgatggaattcaagattctattgtcggagatggatggtttcagaatgagcca
tctggggtttccaagaatttagctgagaactcggttccaccgcctaatggtgttgaaaag
aacaaccttgaaagtaaagggcaggagaagaattgtgaaaatagtaattggaatttgttt
gattattcttctaaggagaatggagtgcatagggaggacaaaagttcttgtgagtcaagg
gataggggtttggatagtgaagagaagtgtggcaagagggctcgtgtgaatggttccaag
aatgataggcagtatccaagtagagggcaatattaccccagggatagggagaggtgttct
gctagaaaacgagttcgcgattgggatgaatttgataggagagatagggagcatgttagg
agaagagagcattataatggtagtagtaggagggatgggagagatagggaacggagagat
agagaaccaaggggttattgggaaagggatcgatcagggtccaatgaggtggtttttaga
ttgggtacttgggaagcagaccggtacagagaagggaaggcagctaatgacaaaagtcag
gaatgcaatggaaagatagagaagaaagttgaacagcctaaggaaaaacttttggaggag
caggctcgtcagtatcagttggatgttcttgaacaggcaaaaaagaaaaatacaattgca
tttcttgaaacaggggcagggaagacactcattgctgttctcctcatcaaaagtatttgt
gatgatttgcaaaagcaaaagaaaaaaatgctctctgtctttttggttcctaaagttcca
ctagtttatcagcaagctgaagttattcgtgagcgaactggttatcaagtgggtcattat
tgtggagagatgggtcaagatttctgggatgctcgaaggtggcagcgtgagtttgaaaca
aaacaggttttagttatgacagctcagattctgctgaatattttgaggcacagcataatt
aaaatggaagcaatcaatcttctaattctggatgaatgtcatcatgctgtgaagaaacat
ccttattcactggtgatgtctgaattctatcacaccacgccaaaggagaatagaccttct
gtttttgggatgactgcttctcctgtgaacttgaagggcgtttcaagtcaagttgattgt
gcaataaagattcgtaatctagaaagtaaactggattctgtagtctgtacaataaaagac
cgcaaggaacttgagagacatgtgccaatgccctcagaaattgtggttgagtatgacaaa
gcggccagtttatggtcccttcatgaacaaataaaacaaatggaagtggcagttgaagaa
gctgcgcagtcaagctctaggagaagtaaatggcagttcatgggagctagagatgcagga
gccaaggaagagctccgccaagtttatggtgtctctgaaagaacagaaagtgatggagct
gctaatttgattcaaaagttgagggccattaattatgcacttggtgaactgggtcaatgg
tgtgcttgcaaggttgcacaatcttttttgacagccttacaaaatgatgagagggcaaac
taccagcttgatgtcaagtttcaagaatcttacctaaataaagttgtgtctctcttacaa
tgccaattatcagagggagctgttactgacaaagatatgagcactgctgaggcagagaac
aaaagtgctgaagatggaaccagtcctgatgagattgaggaaggagagctccctgacagt
tatgttgtctctggtggagagcacgtggatgtgatcattggagcggctgttgcagatgga
aaagtgaccccgaaagtacagtcattgattaaaatacttctcaaatatcaacacacagag
gattttcgtgcaatcatctttgttgagcgagttgtggctgctttagtccttcctaaggtt
tttgcagagcttccatctctgaattttattaggtgtgcaagtttgattgggcacaacaac
agccaagaaatgcgaactggacaaatgcaagacacaattgctaaattccgagatggtcgt
gtgacattgttagttgcaactagtgttgctgaggaaggattggatattcggcaatgcaat
gttgtaattcgttttgatcttgcaaaaactgttttggcatacattcagtctaggggtcgt
gcaaggaagcctgggtcagattacatcttgatgattgagagaggaaatctatctcatgct
gcattcctaaagaatgcacggaatagtgaggagaccttgcggaaagaagcaattgagaga
actgaccttagtcatctgaaggatacttcaaggttgatttcggtggatatggtaccaggt
acagtgtaccaggttgaatcaactggtgctattgtgagcttaaattctgctgttggactc
atccatttttactgctctcagcttcctagtgacagatattcaatacttcggcctgagttt
attatggagaagcatgagaagccaggaggtccaaccgaatattcttgcaagcttcaactc
ccctgcaatgcaccgtttgaagagcttgagggtcccatatgcagttcaatgcgtcttgcc
cagcaggctgtatgtttggctgcttgcaagaagctccatgagatgggagcatttactgat
atgcttttgccagacaaaggaagtggggaagaagctgagaaggttgaccagaatgatgaa
agagacccacttcctggaactgctaggcatagagagttctatccggaaggtgtagcaaat
atactccagggagaatggattttatctggaagagatggcactgaggactccaaaatactt
catctgtacatgtatactatcaaatgtgtaaatagtggctcttcaaaagatccattctta
aataaagtctcagattttgcagtactttttggcaaagagctggatgcagaggtgttatcg
atgtcggtggatctatttatcgctcgagccatgataacaaaggcatctcttgtcttcagg
ggatcgatagatattactgaaagtcagctggcatcccttaaaagttttcacgtaagattg
atgagcattgtactggacgtggatgttgatccttctaccactccttgggatcctgccaag
gcatatttgtttgtccccgtggttggcgataagtttgtagatcctgtaaaagagattgac
tgggatttggttgataatataatcacaacagatgcatggagcaatccccttcagagagca
aggccagatgtttaccttggcactaatgagagaacgctcggtggtgacagaagggagtat
ggatttgggaaattgcgtcatggcatagcctttgggcacaaaccccatcctacttatggt
atcagaggagctgtagccccatttgatgttgtgaaagctactggggtggttcctactcga
gatgtgattgaggtacaagaaggggatttgaccaaaggcaaattgattatggctgatggt
ttcttacatgcagaagatcttgttggaaaaatagtaacagctgctcattcagggaagagg
ttttatgtagattcaattcgctatgacatgacagcagagacctcatttccaaggaaagag
ggctatcttggtcctctggagtacagctcatatgccgattactataagcagaagtatggt
gttgagttgagacacaagcaacaatctttaataagaggtcgtggtgtttcatattgcaag
aatctcttatctcctcgatttgagcacttagaaggtgaatctgaggaggctcttgacaaa
acatactatgtgtttctgcctccggagctgtgttttgttcatccactttctggatcactt
gttagaggtgcccagaggttaccctctataatgaggagggttgaaagcatgcttctggca
gttcaacttaagcgtataatacaattttcagtccctgcttcaaagattttggaagctttg
actgctgcctcctgccaggagacattttgctatgaaagggcagagcttctgggagatgct
tacttgaaatgggttgttagtcgatttttgtttctcaaatatccccagaaacatgaaggt
caacttaccaggatgagacaactaatggtgagtaacatggttttgtatcagtatgcacta
agtaagggacttcaatcatatatccaagcagatcgctttgcaccgtctagatgggctgct
cctggggtattgccagtctttgacgaggatacaaaagatggagacacgtccttatttgat
caagaacaggcaactgttgatgttataccagtaaaagaacacagtgatgggtttgaagat
gaagaaatggaagatggtgagattgagagtgactcaagttcttacagagtcctctctagc
aagaccctagcagatgttgttgaagcactaatcggaatttattacgttgaaggtgggaaa
aatgcagctaaccacctcatgaaatggattgggattcaggtggagtctgatcctgatgag
atggaatctatggtgacgccatctagtgttccagaaagtatactaaggagtgtaaatttt
gatgccctagaaggtgcgttgaacattaagtttaaaaacagggccttgttggtagaagct
attactcatgcttcacgcccatcttctggagtatcttgctaccagcgtttggagtttgtt
ggtgatgcagtcttagatcatcttatcacgagacacttgtttttcacatacaccaatctg
cctccgggtcggttgactgatttgcgagctgctgctgtaaacaatgaaaattttgcacgt
gttgcagtaaagcaccagctgcacgtgcaccttcggcatggatcaagtgcccttgaaaaa
cagattcgggactttgtgaaggaagttcaggatgagttattaaagccaggattcaactcc
tttgggttgggagattgcaaagctccaaaagtccttggagatattgtcgaatccattgct
ggtgccatttttcttgacagtggacgagacacttcagttgtctggagggtatttcaacct
ctgttgcatcccatggtcactccagagacattgccaatgcatcctgtgcgggaactgcaa
gagcgatgccagcaacaagctgaaggcttggaatacaaagccagtcgaagtggtaatttg
gccactgtggaggttttcattgatggtgtccagattggggttgctcagaaccctcaaaag
aagatggcacagaaactagctgccaggaacgcgcttgctgttttgaaagagaaggaaaca
gctgaagctaaagagaacactgaggagaatggaaagaagaagaagaatggcaaccagaca
tttaccagacaaacattgaatgatatctgcctgcgtagaaattggcctatgccgttctat
cggtgtgtgaatgagggggggcctgcacatgcaaagagatttacctttgctgttaaggtg
aataccgctgacagggggtggacagatgaatgcataggtgagccgatgcctagtgttaag
aaagccaaagactcagctgcggtgcttctcttggaacttttaaacaaatggtattcatga
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