Theobroma cacao (cacao): 18614389
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Entry
18614389 CDS
T02994
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18614389
Spliceosome [BR:
tcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18614389
Complex C
U4/U6.U5 tri-SnRNP related factors
18614389
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Gene cluster
GFIT
Motif
Pfam:
MA3
MIF4G
Motif
Other DBs
NCBI-GeneID:
18614389
NCBI-ProteinID:
XP_007052194
UniProt:
A0AB32VRP9
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All DBs
Position
1:complement(35841312..35846955)
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AA seq
1003 aa
AA seq
DB search
MMIREMRVVGVVIVIAGILGQIEIGEGVEEKEKGIMMRRRRIGGESILDLLMRKKAKRGN
RGGRSGSVREGGQERNQDGDGDENRWRERSGAFDEEDKRANRDRKRERERIRDDDVKDRR
REHSGSSDEEDKLGNRDGRREREKIHDEEEENRRREHSGSSDEEEGKRANRDRRRESKRG
GGKERNQDGDVGENRQRERPGSFDEEDNRANRDRKRERQRIHDGDDEEGDKLDNRDRRRE
REGIRDDDGKSKRREHSRSSDEEEDKHAARDRKRERERLRDDDRNRRRDAVEENSESSDE
EEKRGKRDRRGERDRRNRHDNGHRDRHNHRQRESEEDRYRHRDRHRHSRHDSDDDEDYRR
RSQRNKERENKSDRRDNDNQPSRRSRDDNSFKEKEEGEIKQKQPALQQNNLNGDTANLGR
SGGVYIPPFKLARMMKETEDKSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE
NLIRGRGLFCRSCMKSQMASPGFTDVFAAFVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN
DKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSLLQDLS
PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRSELDLVEHEDQLTH
EISLQDEIDPEITLDIFKPDPQFLENEKRYEELKKTILGEESDDEEGSDVASGDEEDDDD
DDETDEEDEQQMKIRDETETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELC
VMLLECCSQERTYLRYYGLLGQRFCMINKVYQENFDQCFVQQYSMIHRLETNKLRNVAKF
FAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRRLNERLSDPTMLD
SFESIFPRDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQQKTASDSEAEPES
GSSSSSESGGSSSSDSETASSDSESNSSGSDESERRRKRRRRR
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgatgattcgagagatgagagtggtgggcgtcgtaatcgtgatagcaggcattctaggt
cagatagagataggggaaggcgtggaagagaaagagaaaggaatcatgatgagaaggagg
agaataggcggagagagcattctggatcttctgatgaggaagaaggcaaagcgtggtaat
agaggtggaagaagcggaagcgtaagggaaggaggacaagagaggaatcaagatggtgat
ggtgatgagaataggtggagagaacgctctggagcttttgatgaagaagacaagcgtgcc
aatagagataggaagcgagaaagagaaagaattcgtgatgatgatgttaaggataggcgg
agagaacattcaggatcttctgatgaagaagacaagcttggcaatagagatggaaggcga
gaaagagaaaaaatccatgacgaggaggaggaaaataggcggagagagcattctggatct
tctgatgaggaagaaggcaaacgtgctaatagagataggaggcgtgaaagcaaaagagga
ggaggaaaagaaagaaatcaagatggtgatgttggtgagaataggcagagagaacgtcct
ggatcttttgatgaagaagacaaccgtgccaatagagataggaaacgagaaagacaaaga
attcatgatggtgatgatgaagaaggagataagcttgacaatagagatagaaggagagaa
agagaaggaattcgtgatgatgatggtaagagcaagcggagagaacattctagatcttct
gatgaagaagaagacaagcatgccgctagagatagaaagcgagaaagagagagacttcgt
gatgatgataggaataggcggagagatgcagtggaggaaaattctgaatcctctgatgag
gaagagaagagaggcaagagagataggaggggagaaagggatagaaggaataggcatgac
aatggacatagggataggcataaccatagacagcgggaatctgaagaagataggtacaga
catagggaccgacaccgtcattcacggcatgattcagatgatgatgaggattacagaaga
aggtcccaaagaaataaagaacgcgagaataaaagtgataggagagacaatgataatcag
cccagccgtagaagcagagatgataacagttttaaggagaaagaagaaggagaaatcaag
cagaaacaaccagctttgcaacaaaacaacttgaatggtgatacggcgaatttaggtagg
agtggaggagtttatattcctccatttaaactagcaagaatgatgaaggagacagaagat
aagagcagtgttgaatatcagcgattaacatgggatgcgcttagaaaaagtatcaatgga
ctagttaacaaagtcaatgctactaatataaagaatattattccagaactctttgctgag
aatcttattcgaggaaggggtctcttttgtcgttcatgtatgaaatctcagatggcatct
ccagggttcacagatgtttttgctgcatttgtggccgttgttaacaccaagtttcctgag
gtgggggatttgttgttgagaaggattgttttgcagcttaagagagcatataagcggaat
gacaagcctcaattattagctgccgttaaatttatagcacatcttgtgaaccagcaagtg
gctcatgagattattgctttggaactgctcactgttttgctggagaaccctactgatgac
agtgttgaggtggccgttggttttgttaccgagtgtggatcattacttcaggatctctca
ccaaaaggcctccatggtatttttgagcgttttcggggcattcttcatgaaggggagata
gataaacgtgttcaatttctgatagagggcttatttgctataaggaaagccaagtttcag
gggtaccctgctgttcgttcagaactagaccttgttgagcacgaggaccaattaactcac
gaaatatctctccaagatgagatagatccagagatcacccttgacattttcaaaccagat
cctcagttcttggagaatgaaaagcgttatgaagagttgaagaaaaccattcttggtgag
gaatccgatgatgaagaggggtctgatgtggcttcaggtgatgaggaggatgacgatgat
gatgacgaaactgatgaagaagatgagcagcagatgaaaataagagatgagacagagaca
aatcttataaatcttcggaggacaatctacctgacaatcatgtccagtgtagattttgaa
gaggctggacacaagctgctgaaaattaagcttgagccaggtcaagagatggagttatgc
gttatgctgttggagtgctgcagtcaagagagaacttaccttcgatattatggtcttctg
gggcagcgtttttgcatgatcaacaaagtctatcaggaaaattttgatcaatgcttcgtt
cagcagtattctatgattcatcgtcttgaaacaaacaagttacgtaatgtggcgaagttt
tttgcacatttacttggcacagatgctctgccttggcatgtgctagcctatatacgatta
actgaggaggacacaacttcttcttcccgaattttcatcaagattctcttccaggaatta
tcagagcatcttggaattcgcagactgaatgagcggctttcagatcccacgatgctggat
tcatttgaatctattttcccaagagataatcccaagaacacacgattttccatcaacttt
ttcacttccattgggcttggtggtatcactgagaatttgcgtgagtatttgaagaacatg
ccacggcttatcatgcaacaacagaaaacagcatctgattcagaagcagaacctgaatct
gggagctcgagctcgtctgaatctgggggctcgagttcatctgattcagaaactgctagt
tctgactcagagtcaaattcgtcaggttctgatgaaagtgaaaggcgcagaaagaggagg
aggaggagatga
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