Theobroma cacao (cacao): 18614403
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Entry
18614403 CDS
T02994
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18614403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18614403
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18614403
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
DUF6306
Motif
Other DBs
NCBI-GeneID:
18614403
NCBI-ProteinID:
XP_007052219
UniProt:
A0AB32VMS0
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Position
1:complement(35928778..35934858)
Genome browser
AA seq
782 aa
AA seq
DB search
MSGFSFPSSSSSQSSSSSSSSPFSLGSSPSPFGSSTSASAPTFGSSLFNSNPSSSSSTAI
TTTPAFSSNPASGSSPFVGFGQPSSSSSSASSAPVSSFAVGSGSGASPFSSSSSSATSGL
FGAASSASTSPLPWGAPSSAAPSAAPSASPLFVSASSAAGSGSSLFGTSISSTSSPSFGF
ATASSTVSSALSIFGASSSAASTTGSSLFGASSFTASTTGSSLFGASSFAASTTGSSLFV
ACSSASTTPLFGSTASSGPSLFGASALAVSSASSPFGASGGSSLFLSSPAPTAAPTTSSF
GSSSSSSASTAAAATTPSFSSLLSSSSASNSTSASPFLASTGFSFSSSSSFLKSTASSTS
TPTSTTAPSLTAAASSSSSSGFSFAPPSSSASQPTFGYGNAAAMSKPTSLSFGTSSAPLF
STVTTTTSAYTPAASTAAASAASSAAASTPAFPTFNLSSSSATTASSSAAPASSAASSAA
VSSFTGFGVTNAAATSGSTSSFTGFSLSTKPSAPTSSSQAQSTTTAPVFSFPGSSSAASI
TSTSSTTTAQTSSTLVVASSSGTSLSATAAISATPKLPSEITGKTVEEIIKEWNAELQER
TGKFRKQASAIAEWDRRILQNRDVLLRLEIEVAKVVEAQASLERQLELIETHQQEVDKAL
LSMEEEAERIYKDERGLLLDDEAASTRDAMYEQAEIVERELEQMAEQIKSIIETVNSSQG
GELEALDGMTPLDVVVRILNNQLTSLMWIDEKAEEFSSRIQKLAMQGSAADRELMAPKFW
MS
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttctcgttcccttcctcatcctcttctcaatcttcatcatcatcttcgtca
tctccgttctcattaggatcctccccatctccattcgggtcatccacttctgcatccgca
cccacttttggttcttcgcttttcaactcaaaccctagctcctcctcctccaccgccata
accaccaccccggcattctcgtcaaatcctgcctccggctcgagtccattcgtcgggttc
ggacaacccagctcttcctcttcttccgcctcttcggctcccgtatcctctttcgcggtc
ggttccggttccggcgcatcccccttctcctcatcttcttcttctgcaacctccggtttg
ttcggagcagcttcttctgcatcaacttcacctttgccttggggcgcaccttcttccgca
gcaccttccgcagcaccttccgcttcgccgctgtttgtctcggcttcttccgctgcaggt
tcgggttcatccttgtttgggacatcgatttctagtacgagttcgccttcatttgggttc
gccacagcttcatctacggtcagttctgctctgtccatttttggagcatcttcatccgca
gcgagtacaacaggttcatctttattcggggcatcttcattcacagcgagtacaacaggt
tcatctttattcggggcatcttcattcgcagctagtacaacaggttcatcgttattcgtg
gcatgttcatcggcttctactactcctttgtttggctccacagcaagttcaggtccatcc
ctctttggggcatctgcattagcagtaagttcagcttcatccccgtttggagccagcggt
ggttcctctctatttttatcttcaccagcgccaactgcagctcctactactagctctttt
ggctcttcatcatcgtcttcagcttctactgctgctgcagctacaactccatccttttca
agcttgctatcatcaagctctgcttcaaattcaacctccgcttcaccattcttggcttct
actgggttctctttctcgagtagttcgtcatttttgaagagcactgcaagttcaacatca
acaccaacctctacgacagctccttcgttaacagctgctgcttcttcatcaagctcgtca
ggcttctctttcgctccaccttcttcttcagcctctcaacctacctttggatatggcaat
gcagctgccatgtctaaacccacttctttgtcttttggaacgtcatcggcgccattgttt
tctacagttaccaccacaactagtgcttatactccagcagctagtactgctgctgcttct
gctgcttcttctgctgcggcttcaacaccggcattccctacatttaatttgagttcatct
tctgctactacggcttcttcatcagctgcacctgcaagttcagctgcttcatcagctgct
gtgagttcttttactggatttggtgtgacaaatgcagctgctacgtcagggagtaccagt
tctttcactggtttttcattatcgacaaaaccatctgctcctacttcatcctcacaagcg
caatccactactactgctcctgtattcagtttccctggttccagttctgctgcttcaata
acttcaacttccagtactacgactgcccaaacatcatcaacccttgttgtagcttcaagt
agtgggactagtttaagtgccacagctgcaatatctgctacaccaaaattaccatctgag
ataacaggaaagacagtggaggagatcatcaaggaatggaatgctgaacttcaagaacgc
actggaaaatttcgaaagcaggccagtgcaatagctgagtgggacaggcgaatattgcag
aatcgtgatgttcttcttaggcttgagattgaagtggcaaaagtggttgaggcccaagct
agcttggagcgacaactggagttaattgagactcaccagcaagaggttgataaagctttg
ctaagtatggaagaagaagcagaacgtatttataaggatgagcgtggattgcttcttgat
gatgaagctgcatcaacacgagatgcaatgtatgagcaggcagaaattgtggagagggaa
ttggagcagatggcagaacagattaaatctattattgagactgtaaactctagtcagggt
ggggaacttgaggcacttgatggaatgactcctttagatgtggttgtcagaatcttgaat
aatcaactgacttctttaatgtggattgatgagaaggctgaggaattctcttctcgtatc
caaaagcttgccatgcagggttctgccgcagatcgagaattaatggctccgaaattttgg
atgtcatga
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