Theobroma cacao (cacao): 18614648
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Entry
18614648 CDS
T02994
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18614648
09123 Folding, sorting and degradation
03018 RNA degradation
18614648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18614648
03041 Spliceosome [BR:
tcc03041
]
18614648
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18614648
mRNA degradation factors
5'-3' decay
Lsm complex
18614648
Spliceosome [BR:
tcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
18614648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
18614648
NCBI-ProteinID:
XP_017969315
UniProt:
A0AB32VV35
A0A061DVC4
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Position
1:complement(37118909..37121503)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaggaaagaaaccgtcttggatttggcaaagtttgtagacaaaggtgttcag
gtcaaactcactggtggtagacaagtcacagggaccttaaaaggatatgaccagctacta
aatctcgtcctggatgaagctgtggaatttctacgcgatccagatgatccattgaagact
actgatcagaccaggcgtcttggcttgatagtttgtaggggtactgctgttatgctcgtg
tcaccaactgatggtacagatgagattgctaatcctttcatccagccagatggagcctga
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