KEGG   Theobroma cacao (cacao): 18614648
Entry
18614648          CDS       T02994                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18614648
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18614648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18614648
   03041 Spliceosome [BR:tcc03041]
    18614648
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18614648
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     18614648
Spliceosome [BR:tcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    18614648
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 18614648
NCBI-ProteinID: XP_017969315
UniProt: A0AB32VV35 A0A061DVC4
LinkDB
Position
1:complement(37118909..37121503)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggcaggaaagaaaccgtcttggatttggcaaagtttgtagacaaaggtgttcag
gtcaaactcactggtggtagacaagtcacagggaccttaaaaggatatgaccagctacta
aatctcgtcctggatgaagctgtggaatttctacgcgatccagatgatccattgaagact
actgatcagaccaggcgtcttggcttgatagtttgtaggggtactgctgttatgctcgtg
tcaccaactgatggtacagatgagattgctaatcctttcatccagccagatggagcctga

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