Thermohahella caldifontis: AAIA72_04790
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Entry
AAIA72_04790 CDS
T11202
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tcd Thermohahella caldifontis
Pathway
tcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAIA72_04790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcd03400
]
AAIA72_04790 (mfd)
Enzymes [BR:
tcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAIA72_04790 (mfd)
DNA repair and recombination proteins [BR:
tcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAIA72_04790 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XDT73292
UniProt:
A0AB39UZH2
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Position
989004..992441
Genome browser
AA seq
1145 aa
AA seq
DB search
MSASLIEARFLDILKKHDTAHWPELPLSAWGWLLPRIQDALQSPMLVLTSQPDDAERLVN
ALRSLGGSRLDARLLPDWETLPYDSFSPHQDIVSTRIRCLHDLANSKVDILVCAIPAAMH
RLAPMSHLQGTVFRLRLGDRLDPAAWRTRLVEAGYRLVDTVYEPGEFAVRGAILDVFPSG
SPLPIRIELFDEEIDSLRTFDPESQRSLNKLDSIDLLPAHEFPLDAEAVEAFRQRFHTHF
AEAPRNIPLIDELKQGIAPAGIEYWLPLFFEKTATLVDYVPDHGTVVCLGSWQEAARQFW
EHVCQRYEDLNVDPRRPLMAPAEVCLTPDLLAHATHQRKRAVTRAALPADGIGPLPDIHV
EERASDPLARLRSALDTPGFRAILCAESAGRCEIIHALLNRHDLDHALCDSLDDALNSDA
RLALCVADIQGGFVWTESGRALITEQDLFTGYVPQKRRRKSTQDEFENVFQSLTELKPGA
PVVHIEHGVGRYRGLERISAGGVEQEFLVLEYAEGAKLYVPVTSLNQISRYTGLDESLAP
LHKLGSERWSTAREKTLKKIRDTAAELLEVYARREAQKGFAFPPPDEAYEDFAAAFPFEE
TPDQRSAVEAVIRDMTSERPMDRLVCGDVGFGKTEVAMRAAFLAAHAGKQVAVLVPTTLL
AQQHFESFTDRFAGTAITIELLSRFRSGTQTDDVLKRLEQGKVDIVIGTHKLLQPSVKFR
DLGLLIVDEEHRFGVNQKEKIKQLRANVDILALTATPIPRTLNMSLGGLRDLSVISTPPQ
KRLSVRTFIQEKSAGIIKEAIRRELLRGGQVFYLYNEVKTIERCARELAEMIPEARIAVA
HGQMRERDLEKVMSDFYHKRYNVLVCTTIIETGIDIPSANTILIERADTFGLAQLHQLRG
RVGRSHHQAYAYLMTPPPSALSSDARKRLEAIAEAQDLGAGFILATHDMEIRGAGELLGD
EQSGHMETVGFSLYMQLLEETIKAMREGRDLSLEDTGPAGCEINLRVPALIPDSYLPDVN
QRLRLYKRLSSCRSEEELQAIQVEMIDRFGLLPEEVKHLVRQTRLRMQADALGITRIDVG
AQQGTVEFAKHTRVDPMRLIQLIQSRPDSYRLSGGDRLTLLKPPKEPEERVHYIEHLLTL
LEART
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcaagtttgattgaagcccggtttctcgacatcctgaaaaagcacgacaccgcc
cactggcccgagctgccgctgagtgcctggggctggttgctgccccggatccaggacgcg
ctgcaaagcccgatgctggtgctgaccagtcagccggatgacgccgaacgcctggtcaac
gccctgcgcagtctgggaggcagtcgcctggatgcccggctgctgcccgactgggaaacc
ctgccctacgacagcttttcgccgcaccaggatattgtctcgacccggatccgctgcctg
cacgacctggccaacagcaaggtggacattctggtctgcgccatcccggcagccatgcac
cggctggcccccatgtcccatctgcagggcaccgttttccgcctccgcctgggtgaccgg
ctggaccccgccgcatggcgcacacgcctggtggaagccggctaccggcttgtggatacg
gtctacgagccgggagaattcgccgtgcggggcgccattctggacgtgttccccagcggc
agtccgctgcccatccgcatcgaactgttcgatgaggagattgactcgctgcgcaccttc
gaccccgaaagccagcgctccctgaacaagctggacagcattgatctgctccccgctcac
gagttcccgctggatgcggaggcggtcgaagccttccgccagcgcttccacacgcacttt
gccgaagcgccccgcaacattccgctcattgacgagctgaaacagggtatcgcgccagcc
ggcatcgagtactggctgcctctcttttttgaaaagacggccactctggtggattatgtc
ccggaccatggtacggtggtctgtctcggatcctggcaagaggcggcccggcagttctgg
gagcacgtctgccagcgttacgaagatctcaatgtggaccccagacggccactgatggca
cctgcagaggtatgcctgacgcccgatcttctggcccatgccacacatcagcgcaagcgt
gccgtcacccgggccgcattgccggccgacggcattggtccgctaccggacattcatgtg
gaagagcgggcttcagatccgctggcaaggctgcgctccgcgctggacacgcccggcttt
cgcgccatcctgtgtgccgaatcggcggggcgctgcgaaatcattcatgccctgctgaac
cgccatgatctcgatcacgcgctgtgcgacagcctggatgacgccctgaacagcgatgcc
cgactggcactgtgcgtggcggacattcagggtggcttcgtatggacggagtccggccgc
gccctcattaccgaacaggatctgtttacgggctatgttccgcagaaacggcgccggaaa
agcacacaggacgagttcgagaacgtcttccagagcctgaccgaactcaagcccggcgcc
ccggttgtccatatcgagcatggtgtgggtcgttaccgcggactggagcgcatttctgca
ggtggtgtggagcaggaatttctcgtcctcgaatatgcggaaggggcaaagctgtatgta
ccggtcaccagcctgaaccagatttcccgctataccggactggacgagtcgctggcaccg
ctgcacaagctcggttcggaacgctggagtactgcccgcgagaagacgctgaagaagatc
cgtgacacggcagccgagctcctggaagtctatgcgcgcagggaggcccagaagggtttt
gcctttccgccaccggacgaagcttacgaggactttgccgcggccttccccttcgaggaa
acacccgaccagcgatcggcggtagaagccgtcatccgggacatgacctccgagcgcccc
atggacagactggtgtgcggcgatgtgggattcggcaagacggaagtggccatgcgtgcc
gccttcctggccgcacacgccggcaagcaggtggcggttctggtgcccaccaccctgctg
gcccagcagcacttcgagtccttcaccgaccgttttgcgggcaccgccatcaccatcgag
cttctgtcccgcttccgcagcggcacacagacggacgacgttctgaagcggctggaacag
ggcaaggtggatattgtcatcggcacccacaagctgcttcagccttcggtgaagttcagg
gatctgggcctgctcatcgtggatgaagagcaccggtttggcgtcaaccagaaggagaag
atcaagcagttgcgcgccaatgtggacattctggccctgaccgccaccccgattcccagg
acactcaacatgtcgctgggcgggctgcgcgacctctccgtcatcagcacgccaccccag
aaacggctgtccgtccgcaccttcattcaggaaaaaagcgcgggcatcatcaaggaagcc
atccggcgcgagctgctccggggcggacaggtgttctatctttacaacgaggtcaagacc
atcgagcgctgcgcgcgcgagctggccgaaatgattccggaggcgcgaattgccgtggcg
cacggtcagatgcgggagcgcgacctggaaaaggtcatgtcggatttttaccacaagcgc
tacaacgttctggtctgtaccaccatcatcgaaaccggcatcgacattccctcggccaat
acgatcctgatcgaacgggcggacacgttcggcctggcccagcttcaccagctccgcggc
cgtgtgggccgttcccaccaccaggcctatgcctacctgatgacgccgccccccagcgcg
ctcagcagcgatgcacgcaagcggctggaggccattgccgaagcacaggatctgggtgcc
ggtttcatcctggccacgcacgacatggaaatccgcggtgcaggagagctgctgggagac
gaacagagcggccacatggaaaccgtcggtttcagcctttacatgcaactgctggaggaa
acgatcaaggccatgcgcgagggacgcgacctgtcactggaagacaccggacctgcaggc
tgcgaaatcaacctgcgggtcccggcgctcattcctgacagctaccttccggatgtcaac
cagcgcctgcgcctctacaaacgtctgtcttcctgccgctcggaagaggagcttcaggcc
atccaggtggaaatgatcgatcgcttcggtctgcttcccgaagaagtgaagcacctcgtg
cggcagacacggctgcgcatgcaggccgatgcgctgggcatcacccggattgatgtcggg
gcccagcagggcacagtcgagttcgccaaacacacccgggtggatcccatgcgtctcata
cagctcatccagtcccggccggacagttaccggctgtcaggcggcgaccggctgaccctg
ctgaagcctcccaaggaaccggaagaacgcgtacactacatcgaacatctgctgaccctg
ctggaagcccggacatga
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