Thermohahella caldifontis: AAIA72_05485
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Entry
AAIA72_05485 CDS
T11202
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tcd Thermohahella caldifontis
Pathway
tcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAIA72_05485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcd03019
]
AAIA72_05485
03009 Ribosome biogenesis [BR:
tcd03009
]
AAIA72_05485
Enzymes [BR:
tcd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AAIA72_05485
Messenger RNA biogenesis [BR:
tcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAIA72_05485
Ribosome biogenesis [BR:
tcd03009
]
Prokaryotic type
rRNA processing factors
AAIA72_05485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
DUF5351
Motif
Other DBs
NCBI-ProteinID:
XDT73423
UniProt:
A0AB39UZA2
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All DBs
Position
1130083..1132776
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AA seq
897 aa
AA seq
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MAGVNTPSDMGVIVRTAGVGKTTEQLQWDLDYLLQLWNSIEAACESRKAPFLVYQESNVV
IRAIRDYLRQDIGEVLIDKPEVYEEALSFVRAVMPAFESKLKLYTDDIPLFNRYQIESQI
ETAFQREVKLPSGGSIVIDPTEALVSIDINSSKATKGGDIEETALQTNLEAADEIARQLR
LRDMGGLIVIDFIDMGPAKNQREVENRLKKALELDRARVQVGKISRFGLLEMSRQRLRPS
LEETRTETCPRCAGHGTIRTIESLALSILRLIQEEAFKERTAEVRAICPVTVATYLLNEK
RIQLARIEKRHGVRVLVVPSQTMETPSFEVERVRDDNEEVNQTSYKLAPAEEDDIEIHRS
ATPTEAVRQEAAVKSIAPAQPAPPGAEATKPEPAAEKPLSFWARLRAWFKGETGAVKPAA
PAKPEPTKPVQRRQASGTSSNVKNRNNPRNRNRQSDNQESSRNTSARTSDNAQRKDATKE
DSGNTASTSNRSGQAGRKRQRNRNRNDNRTAARQDTQESPTAKAGNTVETASGEAASEFA
RPRRDRSSRPAEPRDRRPVTTENAEPVTATEPRAEASPAPKEMQAPTESTVSAQTTEQPS
SPSVGEEKISTATQATAADSAEPAETKTAGSGSSPAQAQPRSEETTDTAGENAGDAKDKS
GSEGRPSRRRSRGGRNRNRNRSATTREQQDDSPSETTEKKASETTTNNSEGEAKPVADKV
TDQPEPTTSPERPSELVQKAAQETHDAEKANVTASEEAAPAGEKQQGSARGTASRTPTAS
PVATPVAETSNETPATGAEHTPEKKAQPATDTKAEEASSPEATKKDSREKAAEISDEETA
SESARDAQSPQTPRIPSRRRAPNDPRLRRQSQTGQSGTSGEQLTDTTTEDSSGTPSN
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtcaacacaccctctgacatgggggtcattgtacggaccgcaggcgtgggc
aaaaccactgaacagcttcagtgggacctcgattatctgctgcaactctggaacagtatc
gaggcagcctgcgaatcacgcaaggcaccctttctggtataccaggaaagcaatgttgtt
atccgtgccattcgcgactacctgcgccaagacatcggcgaggtactgatcgacaagccg
gaagtctatgaagaggccctgagcttcgtccgcgcagtcatgccggccttcgaaagcaag
ctcaagctctacacggatgacattcccctcttcaaccgttatcagatcgagtctcagatc
gaaaccgcatttcagcgtgaagtcaaattgccgtccggtggctcaattgtcatcgatccg
actgaagcactcgtctccatcgacatcaactcgagcaaggccaccaagggtggtgacatt
gaagaaaccgcactccagaccaacctggaagctgcagacgaaattgcccgtcagctccgc
ttgcgggatatgggcggcctgattgttatcgatttcatcgacatggggccggccaagaat
cagcgtgaagtggaaaaccgcctcaaaaaggccctggaactggatcgcgcccgggtacag
gttggcaagatctcccgcttcggcctgctggaaatgtcccggcagcggttgagaccctcg
cttgaagagacacgaacggaaacctgcccgcgctgtgccggtcacggcaccatcaggacg
attgagagccttgccttgtcaattcttcgactcatccaggaagaggcattcaaggagcgt
acggctgaagtccgcgccatctgcccggtgacggttgcgacctacctgttgaacgaaaag
cggattcagctggcccggattgaaaagcgtcatggtgtacgggtattggttgttcccagc
caaaccatggaaacaccatcctttgaagttgagcgcgttcgggacgacaacgaggaagtc
aatcagaccagctacaagcttgcaccggccgaggaggatgatatcgaaattcatcgctct
gccacccccaccgaggcggttcgccaggaagcagcagttaaaagcatcgcgcctgcacaa
ccggcacctcccggagccgaagcgaccaaaccggagccggcagccgaaaagccgctgagt
ttctgggcccgtctgcgagcctggttcaagggcgaaaccggtgcagtcaaacctgctgct
cccgccaagccggaaccgacaaagccggttcagcgccggcaggcaagcggtaccagctcc
aatgtcaaaaaccgcaacaatccgcgcaaccgcaacaggcagtcggacaaccaggagtct
tcccgaaacacttcggcgcgaacgtctgacaatgcgcaacgcaaggacgccaccaaagaa
gattccggcaatacagcctcaaccagcaaccggagtggtcaggcagggcgcaagcgccag
cgtaaccgtaaccggaatgacaaccgtactgcggcgcgtcaggacactcaggaaagcccg
acagccaaagcgggcaacacagttgaaacggcatccggcgaagcagcgtctgaatttgca
cgcccacgcagggatcggtcaagcaggccggcagagccgcgtgatcggcgaccagtcacc
acggaaaatgcagaaccggtgaccgctacagaaccccgtgcagaggcctccccggctccg
aaggagatgcaggcacccacagagagcacggtatcggctcagaccacagagcagccatcc
tccccatccgtcggtgaggaaaagatcagtacagcaacgcaggcaacggctgcagacagc
gcagagccggcagagaccaagacagcaggctccgggtcatcgcctgcccaggcgcagccc
cgctctgaagagacgactgataccgccggcgaaaatgcgggagatgccaaagacaaatcc
ggatcagaggggcgcccgtcacgcaggcgcagccgcggtggccggaaccgcaatcgcaat
cgctctgcgacaaccagggagcagcaggacgacagcccaagtgaaacaacggaaaagaag
gcatccgaaaccacgacaaacaatagtgaaggcgaagcaaagccggtggcagacaaggtg
acggatcagccagaaccgaccacgtcacctgagcgcccgtccgagctcgtgcagaaagcg
gcccaggagactcatgatgcagaaaaagccaatgtgaccgcatcagaagaggcggcgcca
gcaggtgaaaagcagcagggctccgcaaggggtacggcatcccggacaccaaccgcatca
ccggtagccacaccggtcgccgaaaccagcaacgagacgcctgccaccggggcagagcat
accccggagaaaaaggcacaacctgccaccgatacgaaagctgaagaggcgtcatcaccg
gaagccaccaaaaaggacagtcgcgagaaagctgccgagatatctgacgaggagaccgca
agtgagtcggcacgtgacgctcagagtccccaaacaccccgcatcccctccaggcggcgc
gcccccaatgatccgagacttcgccgccagagtcagaccgggcaaagcgggacctccggc
gaacagctgacagatacaacaactgaagacagctccggtacgccttccaattga
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