Thermohahella caldifontis: AAIA72_09790
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Entry
AAIA72_09790 CDS
T11202
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tcd Thermohahella caldifontis
Pathway
tcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAIA72_09790 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcd03021
]
AAIA72_09790 (rho)
03019 Messenger RNA biogenesis [BR:
tcd03019
]
AAIA72_09790 (rho)
Transcription machinery [BR:
tcd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AAIA72_09790 (rho)
Messenger RNA biogenesis [BR:
tcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAIA72_09790 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Fungal_virus_P2_C
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XDT71097
UniProt:
A0AB39USU6
LinkDB
All DBs
Position
2030588..2031850
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKKKSVPELLAIAEEMGLENLARSRKQDVIFSILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIRPPKESERYFALLKVDEIN
FDKPERSRNKILFENLTPLFPHERLVLEQGNGSSEDLSARILDLVAPIGKGQRGLIVSPP
KAGKTLLMQNIAQSITRNNPECYLMVLLIDERPEEVTDMQRTVRGEVVASTFDEPPARHV
QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTIIPSSGKVLTGGVDAHALERPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEVHLDRRIAEKRVFPAINI
RRSGTRREELLMEEGELQRVWILRKLLHAMDDDVAATEFLIDKLKTTKTNDEFFQAMKKR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaactcaagaaaaaaagcgttcccgaacttctggccattgccgaagaa
atggggctggagaacctggcacgctcgcgcaagcaggacgttatcttcagcattctgaaa
aaacatgccaagagcggcgaagacatctatggtgacggcgtcctcgaaatcctccaggac
ggcttcggcttcctgcgttccgcggacagctcctacctggccggcccggacgacatttac
gtctcgccgagtcagatccgccgcttcaacctgcgtaccggtgacagcatctccggcaag
atccgcccgcccaaggaaagtgagcgttacttcgccctgctcaaggtggacgagatcaac
ttcgacaagcccgagcgcagccgcaacaagattctgttcgaaaacctgacacccctgttc
ccccatgagcgtctggttctcgaacagggcaacggcagctcggaagacctgtccgcccgg
atcctggatctggtggcccccatcggcaagggacagcggggactgatcgtatcgccgccg
aaggccggcaagaccctgctgatgcagaacattgcccagtccatcacccgcaacaacccg
gagtgttacctgatggtgctgctcatcgacgagcgcccggaggaagtgacggacatgcag
cgcaccgtgcgcggcgaagtggtggccagtaccttcgacgaaccccctgcgcgtcacgtc
caggtggccgaaatggtacttgagaaggccaagcggctggtggagcacaagaaggacgtg
gtcatcctgctcgattccatcacccgcctcgcccgtgcctacaacaccatcatcccgtct
tccggcaaggtactgaccggcggtgtggacgcacacgccctcgagcgtcccaagcgcttt
ttcggtgcagcccggaacgtggaagaaggcggcagcctgaccatcatcgccacggcactg
gtggacaccggctccaagatggacgaggtcatctacgaggaattcaagggcaccggcaac
atggaagtgcatctggaccggcgcattgccgagaagcgcgtattcccggccatcaacatc
cgccgttccggtacccgccgggaagagctgctcatggaggaaggcgagctgcagcgcgtc
tggatcctgcgcaagctcctgcatgccatggatgacgatgtggcagccaccgagttcctc
atcgacaagctcaagaccaccaagaccaatgacgaattcttccaggccatgaagaagcgt
tga
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