Thermohahella caldifontis: AAIA72_15615
Help
Entry
AAIA72_15615 CDS
T11202
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tcd Thermohahella caldifontis
Pathway
tcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAIA72_15615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcd03019
]
AAIA72_15615
03009 Ribosome biogenesis [BR:
tcd03009
]
AAIA72_15615
Enzymes [BR:
tcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAIA72_15615
Messenger RNA biogenesis [BR:
tcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAIA72_15615
Ribosome biogenesis [BR:
tcd03009
]
Prokaryotic type
rRNA helicases
AAIA72_15615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XDT72204
UniProt:
A0AB39UV07
LinkDB
All DBs
Position
complement(3219712..3221487)
Genome browser
AA seq
591 aa
AA seq
DB search
MSDIEIGFEELNLSAPVLDALRRIGYETPSPIQAQAIPPLLEGRDLLGTAQTGTGKTAAF
ALPILSRIDLAQNTPQALVLVPTRELAIQVAEAFQSYASHIKGFHVLPLYGGQDMRAQIR
ALQRGVHVIVGTPGRTLDHLSRRTLDLSRIRHIVLDEADEMLRMGFIDDVTEILKSAPAE
RQTALFSATMPKPIQAIIHNYLKDPVQVRIKPSTSSLANIEQSYWLAKGLNKLDALTRIL
EVEETDGLIIFVRTRTQTAELAEKLEARGFRSAAINGDMSQSAREKTIEQLKSGAIDILI
ATDVAARGIDVARVSHVINYDIPYDTEAYTHRIGRTGRAGRQGKAILFVAPRERRMLSMI
ERATGQKIPPMSLPSRKEVNLKRVEQFQQRITDVIDQEDTAFFTQLIETYIAETGKDPVE
IAGALAFMANQGKPLVMPETPDPVGAPERERSRREPRGEGRPRSAERAPRNPRDRAAHDR
DLDMVTYRIAVGRNHDVRPGDIVGAIANEAGMDSAHIGRIQLFDDYSTVDLPRGMPDGVF
RHLQGVFVRGRRLGLQPMDGSMPVSRPRTGKLSLDKSRPRKGGQRSNKKYS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatattgaaatcgggttcgaagaactgaacctgtccgcgcccgtactggacgca
ctgcgccgcatcggctatgaaaccccttcacccattcaggcccaggccattccgcccctt
ctcgaaggccgcgacctgctgggcacggcccagaccggcaccggcaagaccgccgccttc
gcgctgccgatcctgagcaggatcgacctggcccagaacaccccgcaggcactggtgctg
gtcccgacccgggagctggccatccaggtggccgaggcgtttcagtcctatgccagccac
atcaagggcttccacgtgctgccgctgtacggtggtcaggacatgcgggcgcagatccgg
gcgctgcaacgcggcgtgcatgtcattgtcggcacaccgggccggacactggatcacctg
tcccgccggacactggatctgagccggatccggcatatcgtccttgacgaagcggacgaa
atgctgcgcatgggcttcatcgacgacgtcacggaaattctcaagagcgcgccggcagaa
cgtcagacggccctgttctcggccaccatgccgaaacccattcaggccatcatccacaac
tacctgaaggatcccgttcaggtccgcatcaagccgagcacgtccagcctagccaacatc
gaacagtcctactggctggccaagggcctcaacaagctggatgccctgacccgcattctc
gaagttgaagaaacggacggcctcatcatcttcgtgcgcacccggacccagactgcggaa
ctggctgaaaagctggaagcccgaggattccgcagcgcagccatcaatggcgacatgagc
cagtcggcccgggaaaagaccatcgaacagctcaagtccggtgccatcgacattctgatc
gccacggatgtggccgcacgcggcattgacgtggcgcgcgtcagccatgtcatcaactac
gacatcccctacgatacggaggcctacacccaccgcatcggacgtaccggccgtgctggc
cgtcagggcaaggccatcctgttcgttgcgccgcgcgaacggcgcatgctgtccatgatc
gagcgcgccaccggtcagaagattccgcccatgtccctgccctcgcgcaaggaagtgaat
ctcaagcgggtggaacagttccagcagcgcatcacggatgtgattgatcaggaagatacc
gcattcttcacgcaactgatcgaaacctatatcgccgagaccggcaaggatccggtcgaa
atcgctggcgccctggcattcatggccaatcagggcaaaccgctggtgatgccggaaacg
ccggatccggtgggagcgcctgagcgcgaacgcagccgccgcgaaccccgtggcgaaggc
cgtccgcgttccgcagagcgggcgccccgcaatccgcgtgatcgcgccgcccatgaccgc
gacctggacatggtcacctaccggattgccgtgggtcgcaaccacgacgttcgccccggt
gatatcgtcggggccatcgccaatgaagccggcatggacagcgcccatatcggccgcatc
cagctctttgacgactacagcaccgtggatctcccgcgcggcatgcccgatggcgttttc
cgccatctccagggcgtctttgtgcgcggccgcaggctgggtctgcaacccatggatggc
tccatgccggtcagccgcccccgcacgggcaagctgtctctggacaagagtcgtccccgc
aagggcggccagcggtcgaacaaaaaatattcatga
DBGET
integrated database retrieval system
