Thermococcus celer: A3L02_01075
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Entry
A3L02_01075 CDS
T05076
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
tce
Thermococcus celer
Pathway
tce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L02_01075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tce03019
]
A3L02_01075
Messenger RNA biogenesis [BR:
tce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L02_01075
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
A3L02_01075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Lsr2
DUF883
Motif
Other DBs
NCBI-ProteinID:
ASI98257
UniProt:
A0A218NZZ7
LinkDB
All DBs
Position
complement(181545..182354)
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AA seq
269 aa
AA seq
DB search
MEVMASIMRDHILNLLKEGRRIDGRGLEDYRDLEIKVNVIEKAEGSAWVKLGNTQVLVGI
KVDVGEPFPDLPESGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESAAVELD
KLVIAPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALLSTRMPKVVYDEEKGELQTLDE
YEPLPVRRIPIPVTMAKIGQSILVDPNLDEERVMDGRITVTTDENGMISSVQKGEGGSFK
LEEVMYAVDLATKKAAEIREKVLEAVKAE
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgatggccagcataatgcgcgaccacatcctgaacctcctcaaggaggggagg
aggatagacggccggggcctcgaggactaccgcgacctcgagataaaggtcaacgtaatc
gagaaggccgagggttcggcgtgggtcaaactcggcaacacccaggtcctcgtcgggata
aaggtcgacgtgggcgagcctttcccggaccttcccgagagcggcgtcataacaaccaac
gtcgagctcgttcccctcgcctccccgagctttgagcccggcccgccggatgagaacgcc
atcgagctggcgcgcgttgtggacaggggaataagggagagcgccgctgtggagctcgat
aagctcgtaatcgccccgggcaagctcgtcagggtcgtcttcatcgatgttcacgtcctc
gaccacgacggtaacctcctcgacgcgagtggcataggggccatagccgccctgctgagc
acccggatgcccaaggtcgtctacgacgaggagaagggcgagcttcagaccctcgacgag
tacgagcccctccccgtccgcaggattccgatcccggtcacgatggccaagatcggccag
agcattctcgtggatccaaacctcgacgaggagcgcgtcatggacggcaggataaccgtc
accacggacgagaacggaatgatatcgtcagttcagaagggagagggcggaagcttcaag
ctcgaggaggtcatgtacgccgttgacctggccaccaaaaaggctgcggagataagggag
aaggttctcgaggcggttaaggccgaatga
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