Thermococcus celer: A3L02_01080
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Entry
A3L02_01080 CDS
T05076
Name
(GenBank) exonuclease
KO
K11600
exosome complex component RRP41
Organism
tce
Thermococcus celer
Pathway
tce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L02_01080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tce03019
]
A3L02_01080
Messenger RNA biogenesis [BR:
tce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L02_01080
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
A3L02_01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Pinin_SDK_N
EF-hand_1
Motif
Other DBs
NCBI-ProteinID:
ASI98258
UniProt:
A0A218NZY9
LinkDB
All DBs
Position
complement(182356..183105)
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AA seq
249 aa
AA seq
DB search
MMGKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPR
EIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPR
TAVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKEED
NYGESDVPVAIMPLKNDITLLQMDGYLTKDEFVEAVKLAIKGAKAVYQKQREALKTKYLK
IAEEVGGGE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgatgggcaagccagagggtttaaagctcatagatgagaacgggaggagaatcgacggg
agaaagaagtacgaactcagacccataaagatggaggttggagtgcttaagaacgccgac
ggctccgcctacgtggagtggggcaagaacaagatcctcgccgcggtctacggcccgagg
gagatccacccgaagcaccttcagaggcccgatagggccatactacgcgttagatacaac
atggcccccttcagcgttgaggagaggaagaagcccgggccggatcggaggagcgtcgag
ataagcaaggtcataaggggcgcccttgaaccggctttgatcctcgagatgtttccgaga
acggccgtggacgtcttcattgaggttctgcaggccgacgccggaacgagggttgctgga
ataacggctgcttctctggccctggccgatgcaggtgtgcccatgagggacctcgtggcg
gcatgcgccgcaggaaagatagacggggagatagtcctcgacctcaacaaggaggaggac
aactacggcgaatcggacgttcccgtggccataatgcccctcaagaacgacataaccctc
cttcagatggacggctacctcacaaaggacgagttcgtggaggcggtaaagctcgcgata
aagggtgccaaggcggtctaccagaagcagagggaggccctgaagacgaagtacctcaaa
atagcggaggaggtcggtggaggtgagtga
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