Tigriopus californicus (tidepool copepod): 131876906
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Entry
131876906 CDS
T09700
Name
(RefSeq) beta-1-syntrophin-like
KO
K24064
beta-syntrophin
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
131876906
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Gene cluster
GFIT
Motif
Pfam:
Syntrophin_4th
PDZ
PH
PH_17
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
131876906
NCBI-ProteinID:
XP_059078428
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Position
2:7111727..7115110
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AA seq
484 aa
AA seq
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MTLSGNMIEDVNGQEPFRGPVEVFIKSHWYAGEAAIEKTLLGISLTDEQFEDVNGSPDAP
QHIPEGKRRVEIIKKEPGQGLGISIKGGKENRMPILISKIFEGLAAEATKKLFVGDAILM
VDGTDVKSLTHDEAVQMLKTINTKVVLEVKHVKEVTPYFQKAALLSDLGWSHDVAFLAPN
GKSDTLKKMSPNSEMKWIPLQLCHVQRDTGLDTDLKKLEIHSPNRKKSVVLRVPSDKVEF
WKMALLSAVEMSIQESTLKANFALPSRLIKMGWLCQEHDKSACSENSFDSGMSSDTPSLV
PTFVALNEERLMFWDHVPWALEEWSNPKESLKLVQIRVLCKDNNAKEKNKICIRYGTEGG
VICHTFSAQSRPDYSSWLSSLIQGSLYASKCLESYTVDCEWKSLKCVLKLHVDKGFSLVD
PVKNHTLWSFPFHALIASNDDGAKLLWLQFRGREEDEFMLWTNPKIFVFILHNFLSTKLQ
LLGK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacgctctctggcaacatgatcgaggatgtgaacgggcaagaaccgttccgcggaccc
gtggaggtgttcattaaaagtcattggtatgcgggcgaagcggccattgagaaaacgctt
ctgggcatctcgctgaccgatgagcaattcgaagatgtgaatgggagtcccgacgcacca
cagcatatcccggagggcaagcgccgggtcgagattatcaaaaaggaacccggccaaggg
ctgggtatctccatcaaagggggcaaggagaaccgaatgcccatactcatttcgaagatc
ttcgaaggtctggcggccgaagccaccaaaaagctctttgtcggggatgccattctgatg
gtggatgggacggacgtgaagagtttgacccacgatgaggccgtacaaatgctcaaaacc
atcaataccaaagtggttctggaagtgaagcacgttaaagaggtgacgccctacttccaa
aaggcggccctgctctccgatttgggatggtctcatgatgttgcgttcttggcgcccaat
ggcaagagcgataccctaaagaagatgtcgcccaattccgagatgaaatggatcccactg
caattatgccatgtccaaagggacacgggactagataccgatttgaaaaaactggaaatc
cacagtcccaatcggaaaaagtccgtggtccttcgagttccaagcgacaaagtcgagttt
tggaagatggcccttttgtcagcggtggagatgtccatccaagagtccacgctgaaggcc
aatttcgctctcccctcgcgactcatcaaaatgggctggttgtgccaagagcacgacaag
agcgcttgctccgagaacagtttcgatagcggcatgtccagtgacacgccctcgcttgtg
cccaccttcgtggccttgaatgaagagcgtctgatgttttgggatcacgttccctgggct
ctcgaggaatggtcgaatcccaaagaaagtctaaaactagtccaaattcgagtcttgtgc
aaagacaacaatgccaaggagaagaataagatttgcatccgctacggcactgagggaggt
gtgatctgccacacgttttccgcccaatcccgcccggactactcctcctggctgtcctcc
ttgattcaaggatcattgtacgcttccaagtgtctggaatcctatacggtagattgcgag
tggaagtcgttgaagtgtgtgctgaaacttcacgtggataaaggtttcagcttggtggac
ccggtcaaaaatcataccctgtggagcttcccgttccacgccctcatcgcctctaatgac
gatggagctaaactgctctggcttcagtttcgaggccgagaggaggatgaattcatgctt
tggacgaatccaaaaatcttcgttttcatcttgcacaacttcctgtcgaccaagttgcag
cttctgggcaagtaa
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