KEGG   Tigriopus californicus (tidepool copepod): 131877040
Entry
131877040         CDS       T09700                                 
Name
(RefSeq) WD repeat-containing protein 48-like
  KO
K15361  WD repeat-containing protein 48
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    131877040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131877040
DNA repair and recombination proteins [BR:tcf03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     131877040
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_SPT8 WDR54 Beta-prop_DCAF4 WD_LRWD1 WDR90_beta-prop_4th Beta-prop_Vps41 Nucleoporin_N Beta-prop_WDR75_2nd PEP5_VPS11_N WD40_like Tfb2_C Beta-prop_VPS8 RAWUL
Other DBs
NCBI-GeneID: 131877040
NCBI-ProteinID: XP_059078588
LinkDB
Position
2:10638146..10643392
AA seq 655 aa
MAGRKKVQVSFVIRDEGERCHRAGINSLQYDPTVNRLYTAGRDSIIRIWNVQYGKEPYIQ
SMEHHTDWVNDVQLCCGGKNLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDR
ELVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLNGNKDSIYSLAMNPSGTVIVSGSTE
KVLRVWDPRTCGKIMKLKGHADNIKALVLNRDGTQCLSGSSDGTIKLWNLGQQRCVSTYY
AHEEGVWALQTNEAFTQVFSGGRDKNIWRTELKHPDNHALVCTESAPVLKMILTPDQNGL
WVSTSESHVKHWNLGRADFQRASLNSREPLLTEPDYVIRGGSSIKQYHILNDKRHILTRD
TESNVALYDILKAQKVKDLGPVDFDAEVKQRHQVVYVPNWFTVDLKTGMLTVHLGQDEND
CLSAWVSARETGLAPNDAVDQKVNYGGLLLQALLEHWRRPFPLEEEPDIDGGVIHNGVGR
GGNEYFSVPGHTPVIFSEVGGRTLYRLLARDAGGDTEGVLLNETVPSWVIDIVVERKLPK
FIKVTFYVLPHKELGFKSFKRERLIANDFLQIRKVIEHVYEKVICGSSEAGSSAGSPTGD
RDQQRSGEDSSSIAEDRVELLCNDGVLDPNLDLRTVKYFIWKSFSDLVLHYKFLR
NT seq 1968 nt   +upstreamnt  +downstreamnt
atggccggccggaaaaaggttcaggtgtcttttgtgatccgtgatgaaggtgagcgctgt
catcgcgctggaatcaactccttgcagtatgacccgaccgtgaaccgcctctacaccgct
gggcgggactccatcatcaggatatggaacgttcagtatggcaaagagccctacatccag
tccatggagcatcacacagattgggtcaacgatgttcaattgtgttgtggcgggaagaac
ttgatctccgcctcgtcggataccacggtcaaggtgtggaacgcccacaagggcttctgc
atgtccaccctacgcacccacaaggactacgttaaagctttggcctatgccaaggaccgc
gaattggtggcctcggccggtctggacaaggccattttcttgtgggatgtgaacactctc
acggccttgaccgcctccaataacacggtgactacctcgagtcttaatgggaacaaggac
tcgatctacagtctggccatgaatccctcggggacggtgatcgtgagtggttccacggag
aaggtcttgagagtgtgggatccgcggacttgtggcaagatcatgaagctgaagggccat
gcggacaatatcaaggccttggtccttaaccgtgatggtactcagtgtttgtcaggcagt
tccgatggaacaatcaaattgtggaatcttggccaacagcgatgtgtgagtacctattac
gcccacgaagagggcgtttgggccttacaaaccaacgaggcgttcacgcaagtcttctcc
gggggtcgggacaagaatatttggcggacagagctgaaacatccggacaatcacgcccta
gtatgcacggaatccgccccagttctgaaaatgattctcactccggatcagaatggacta
tgggtttccacttcggaatcgcatgtcaagcattggaatttgggccgggcagatttccaa
cgtgccagtctgaattcgcgcgagcctttgctgaccgagccggactacgtgattcgaggc
gggagctcgatcaagcaatatcacatcctcaacgataaaagacatattttgacgcgagac
acggaatcgaatgtagctctgtacgatatcctgaaagcgcagaaggtcaaggatttgggt
cctgtggactttgatgccgaggtcaaacagcgtcatcaagtagtttatgtgccaaattgg
ttcactgtggacttgaagacgggtatgctcactgttcatttgggccaggacgagaacgat
tgcctttcggcttgggtttccgctcgagaaaccggattggcgcctaacgacgccgtcgat
cagaaggtcaactacggtggacttcttctacaggctcttctggagcactggcgaaggcct
tttcctttggaagaggaaccagacattgacggaggggttatccataatggagtgggtcgt
ggtggtaatgagtacttttctgtgccgggacacactccagtcatattttctgaagttggc
gggcgcacgctttaccggctgcttgcgcgagacgcgggtggagacactgaaggggtgctc
ctcaatgaaaccgttccatcatgggtgattgacatcgtggtggagcggaagttgccaaaa
ttcatcaaggtcacgttctacgtgctcccccataaggaattgggattcaagtcgttcaaa
cgggagcgcttgattgcgaatgatttcctccaaatccgcaaagtcatcgaacacgtttat
gagaaggtgatttgtggcagctcggaagcgggcagctctgcgggctcacccacgggcgat
cgtgatcagcaacgaagtggggaagactctagctcaattgccgaagatcgcgtagagctc
ctttgtaacgatggagtcctggatccgaacctcgacttgcgcaccgtcaaatatttcatt
tggaagtctttctcagatctagttttacactacaaattcctgagatag

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