KEGG   Tigriopus californicus (tidepool copepod): 131877146
Entry
131877146         CDS       T09700                                 
Name
(RefSeq) superkiller complex protein 8-like
  KO
K12602  WD repeat-containing protein 61
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131877146
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcf03019]
    131877146
Messenger RNA biogenesis [BR:tcf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     131877146
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_HPS5 eIF2A Beta-prop_NWD2_C Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_DCAF12 WD40_like Cytochrom_D1 Beta-prop_LRRK2 Tox-HDC
Other DBs
NCBI-GeneID: 131877146
NCBI-ProteinID: XP_059078725
LinkDB
Position
2:7184501..7185978
AA seq 303 aa
MFAVHLKKDNAHAESIWSCAWGKNGPDGPDILVSGGMDDYVKIWQLQAGLLNPLAKLGDH
SLGVVSVAIDHVAAKVVSSSLDSAIHLWDVEKGEKIRSIENGPLEAWTVAFSPNGQHIIS
GSHVGKINMYDVNTGQREEQLDTRGKFTLSIAYSPDGNYVASGAIDGIINIFEMTNRKLI
HTLEGHAMPIRTLSFSADSKLLLTGADDGHLKIYDTTNGTLISTLSGHTSWILGVSTSPQ
GDIFVSGSADNSVKVWSMAEKSCVHSFSEHEGQVWSTACSPKGDRVMSVSEDKSIIIYDI
PGH
NT seq 912 nt   +upstreamnt  +downstreamnt
atgtttgcggttcatctcaagaaggacaacgcccacgccgagagcatctggtcgtgtgct
tggggcaagaatggcccagacgggcccgatatcctcgtatcggggggcatggacgattac
gtcaagatatggcaacttcaggcgggtctcctcaaccccttggccaaattgggcgaccat
tccttaggcgtggtgtcggtggccattgatcacgtggctgccaaggtggtgtccagctcg
ttggattcggccatccatttgtgggatgtcgagaagggcgagaaaatccgtagtatcgaa
aacggccctttggaggcctggactgtggccttcagccccaatggccagcacatcatttcc
ggatcccatgtgggcaaaatcaacatgtatgatgtgaacacggggcagcgagaggaacag
ctggacacccgtggcaagttcaccttatccatcgcatattccccggatggcaattacgtg
gccagtggcgccattgacggtattattaatatatttgagatgaccaatcggaaactcatt
cacaccctggaaggacacgccatgcccatccgcaccctcagcttttctgccgattccaaa
cttttgctcacaggagcggacgacgggcatttgaagatttacgacacaaccaacggcaca
cttatttccacactctcaggacacacgagttggatcttgggcgtatccacttcgccccaa
ggcgacatctttgtgtcaggatcggccgacaattccgtcaaggtttggtcgatggccgag
aaatcttgcgtccactccttcagtgaacacgagggacaagtgtggagcacggcttgtagt
cccaaaggagatcgagtgatgtccgtgtccgaagacaagtcaatcataatctatgacatt
ccgggccattga

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