Tigriopus californicus (tidepool copepod): 131877165
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Entry
131877165 CDS
T09700
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03008
Ribosome biogenesis in eukaryotes
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131877165
09123 Folding, sorting and degradation
03018 RNA degradation
131877165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131877165
03009 Ribosome biogenesis [BR:
tcf03009
]
131877165
03016 Transfer RNA biogenesis [BR:
tcf03016
]
131877165
03036 Chromosome and associated proteins [BR:
tcf03036
]
131877165
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131877165
mRNA degradation factors
5'-3' decay
5' exonucleases
131877165
Ribosome biogenesis [BR:
tcf03009
]
Eukaryotic type
Pre-60S particles
RNases
131877165
Transfer RNA biogenesis [BR:
tcf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
131877165
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131877165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
131877165
NCBI-ProteinID:
XP_059078750
LinkDB
All DBs
Position
2:7828103..7833431
Genome browser
AA seq
1444 aa
AA seq
DB search
MGVPKFYRWLSERYPCLSEVVKEHQIPEFDNLYLDMNGIIHICSHPNDDDPHFRITEEQI
FSNIFHYIEVLFRMIQPRKVFFLAVDGVAPRAKMNQQRGRRFRTAKEAEMNERKAKDRGE
ELPAVARFDSNCITPGTPFMVRLHSQLQYFISNKISTDPLWRQVRVILSGHQTPGEGEHK
IMDFIRYEKAQPGYDPNIRHCLYGLDADLMMLGMCSHDPHFSLLREEVRFGGKKNAASRR
TVTPEETTFHLLHLSLLREYLDHEFSDLRDTLPFEYDMEHIIDDWVLLGFLVGNDFLPHL
PHLHINKGALHELYSSYKKCLPTLGGYINVHGSLHLKRFETFMKVLAEKELERFDDIYSD
TKWLEGKTAKKTATGKHTIQSTPGPGNVYDXXXXXXXXXXXXXPKAEPTPSNKDSALAKL
LSSAAEFMDDDESDPDSSALAKDSTDGFDPSVESSDSRGSVYHMEFRQHKREYYISKLGY
AKVDEDVLKEQALCYVRAIQWNLHYYYDGCMSWSWFYPHHFAPWITDIRDFSDMEMKFDM
NKPFQPFEQLMAVLPAASKELLPEVLQTLMINPSSPIVDYFPKDFECDLNGKQQEWEAVV
LIPFIDEKRLLSAMEPLIKYLKPDEAARNSHGPINVYQYTPKSLGEYEAPAFFPRISINF
AKRTDIDRQNWLVEISKLKKGLMDGVRLDVFFPGFPTLKHLPHKAGLKSAAVRVFEQASR
GENMVLTLDIHDERTAMDVAGQFLNEEVWVGWPHMTEAKVCSVSDDKTIHFVKPNGQVSM
KQANGESITKFTLTKNTLAERYKSRWGIDIKQTRVVIEALPMNGRKYVYGREGKITLEKQ
WAQSPQPFAFHTVLKNILVHDPSFTQYRTLEELFPPQSSVFMLGQPKYGCLGSVQEVISN
TGRIRVCFRDLKEPDMRQVYAMQKSNSPKYANGYRTAQFVGLNSHILSRITGTLFVIKGP
RGADQDRASKHNMGLCLKFNKRNEEIGGYTKRDDENNWLYSSKVVDILHEYIEKFPEVFD
YLFSKTNSSKDVHHVDDIFASNPNVDPLDRLNELIVWLKDLPSASAPRQPCGTLTVEEDI
VKKIEETVAQVVDLEPIEEVVAAVKPVSIYKPNLCQGNSLPDKRVVFRLLDRVVNVREGF
SVPLGLRGTIIGMQNVERAAETVLDVLFDKSFPGGMAIRSSPGRSYRVPGSSIINLTFGD
RDQSGVGGVTSHTKALTHPAPAKRQDWPVHESYGAPPPPSQLPNPNLLFQSKKSEKAAPI
PPAASSLDQLWIGMASGESHPLPVMPFQQPPPTYNPFEQLNQQIQAMSVGNGHAIPPPQS
NASRHPLGFHQGDTARGARPPFPKIDARFVPTQVHQRQKAKAPREVVTVPVGETATVPTP
MKVAPRVEEWVQESVASSVNSNNNGQGRGRGRSATRGGGRGGRGGINRAQKRGRIAANFG
RGQT
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgcccaagttctaccgctggctgagcgagcgctacccgtgcttgagcgaggtg
gtcaaagagcatcagatcccggaattcgacaacctttacttggacatgaacggcatcatc
cacatctgctcgcatcccaacgacgatgacccgcatttccggatcactgaggagcagatc
ttctccaacatttttcactacatcgaggtgcttttccgcatgattcagccgcggaaggtg
ttctttctggccgtggatggcgtcgcaccacgggccaagatgaatcaacaacgcggtcgg
agattccgaacggccaaggaagccgagatgaacgagcggaaggccaaggatcgcggtgaa
gaactgcccgcagtggctagattcgattccaattgtatcacacccggcacaccgttcatg
gttcgattgcacagtcaattgcagtatttcatctcgaacaagatctccacggatccgctc
tggcgacaagtgcgtgtcattctgtccggacatcagactccgggtgaaggcgagcacaaa
atcatggactttattcgctacgaaaaagcccaacccggttatgaccccaacatccgccat
tgcctctacggcttagatgccgatctgatgatgctgggcatgtgctcgcacgacccgcat
ttctcgctcctgcgtgaggaggtgcgcttcggcggcaagaagaatgcggccagtcgtcgg
accgtcacgcccgaggaaaccacgtttcatttgcttcacctgtcgttgctacgcgagtat
ttggatcacgagttttcggatctccgcgatacattgcctttcgaatatgacatggaacac
atcatcgacgattgggtgttactgggctttctggtgggcaacgatttcctgccccacttg
cctcatctccacatcaataaaggcgcgcttcacgagctgtattcgagctacaagaagtgc
ctccccacattaggtggatacatcaatgtgcacggatcccttcatttgaagcgatttgag
acatttatgaaagtgttagcggagaaagaattggaacgctttgacgatatctactcggac
accaagtggttggagggcaaaacggccaaaaagacggctacgggcaaacacactattcag
tccacacccggcccgggcaatgtatatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnacccaaagctgagcccactccgtcaaataaggactcagccctggccaagctt
ttgagctctgcggccgagttcatggacgatgatgaatcggatccggattcctccgcattg
gccaaggactcgactgatggctttgatccttcggttgagagctctgactctcgtggttcg
gtgtatcacatggaattccgtcaacacaaacgcgagtattacattagtaagttgggctac
gccaaagtggacgaggacgtgctcaaagagcaagccttgtgttacgtgagagccatccaa
tggaacttgcactactattacgatgggtgcatgtcgtggtcgtggttttatccgcatcat
ttcgccccctggattacggacattcgtgatttctctgacatggagatgaagtttgacatg
aataagccatttcaaccgtttgagcaactcatggccgttctaccggccgccagtaaggag
ctccttcctgaagtgttgcaaaccttgatgatcaatccctcctcgccaattgtcgattac
tttcctaaagattttgaatgcgatctcaacggaaaacagcaagagtgggaggctgtggtt
ttaatcccattcatcgatgagaaacgactcttgagtgcaatggaacctctgataaaatac
ctcaagcctgatgaagctgcacggaactcccatggcccaatcaatgtgtatcaatacaca
cccaagtccttaggggagtacgaagctcctgctttctttcctaggatctccattaatttt
gccaagcggactgacatcgatcgtcaaaactggctagtagagatcagcaagctgaaaaaa
ggcctcatggacggtgttcgcttggatgtattcttccccgggttcccaacgctcaagcat
ttgccgcataaggctggattaaagtccgctgcagttcgagtttttgaacaagccagccgt
ggggagaacatggtactgaccctcgacattcatgacgagaggacggccatggatgtggct
ggacagttcttgaacgaggaggtgtgggttggatggccgcacatgactgaagccaaggtg
tgctccgtgagcgatgacaagacgattcattttgtcaaaccaaatggacaggtctcgatg
aagcaagccaatggagagtcgataaccaaattcacgctgacaaagaacacccttgcggag
cgctacaagagtcgatggggaattgacatcaagcaaacgagagtggtgatagaggcgttg
cccatgaatggacggaagtatgtgtatggccgagagggcaagatcacgctggaaaagcaa
tgggcgcaatcacctcaaccattcgcttttcacaccgtcctgaagaatattttggtccat
gatccatcgttcactcaatatcggaccctcgaggaactctttcccccgcaatcgtctgtg
tttatgttgggtcaacccaagtacggatgtctaggatcggtccaagaggtgatatccaac
actggaagaatcagagtctgtttccgagatctgaaggaacccgatatgaggcaagtgtat
gcaatgcaaaaatcaaactcccccaaatatgccaacggctatcgaacagcccaatttgtt
ggcttgaattcgcacattttgtctcgaatcacgggcacactcttcgtaattaagggtccc
agaggtgcggatcaggacagagcctcaaaacacaacatgggcctgtgtttaaagttcaac
aaaagaaatgaagaaattggtggctataccaagcgagacgacgaaaacaactggctgtac
tcgagtaaggtggtcgatatcttgcacgagtacatcgagaagtttcccgaagtgtttgac
tatctgttctcaaagacaaactcgtctaaagacgtccatcatgtggacgatatctttgcc
agcaatccgaatgtcgaccctttggatcggttaaatgaactcatcgtatggctaaaggat
ttaccgtccgctagcgcaccgagacaaccctgcggcactttgacggtcgaagaagatatt
gttaaaaagattgaagagaccgtcgctcaagtggtggacttggaaccgattgaagaggtc
gtggccgcagtgaaacccgtttccatctacaagcccaacttatgccagggaaattccctt
cccgataagcgagtcgttttccgcctgctagatcgtgtggtgaatgtccgcgaaggcttt
tccgttcctctcggacttcgaggaacaattattggtatgcaaaatgtggagagagctgct
gagactgtgctcgatgtactctttgacaagtcgttccccgggggcatggccattcggtca
tctccagggcggagctatcgggtaccgggttcctcgatcattaatctgaccttcggtgac
cgagatcaatccggagtaggaggagtcacttctcacactaaagcccttactcaccccgcc
ccggccaagagacaagattggccggttcacgaatcgtacggtgctccacctccgccatcc
caactgcccaacccaaatctcttgtttcaatcgaagaagtctgaaaaagctgccccaatt
cctccagccgcatcctctctcgaccaattatggataggaatggcaagtggagagtcgcat
ccccttcctgtgatgcccttccaacaacctccgcccacttacaacccgttcgaacaactg
aaccaacaaattcaagccatgtccgtcggtaacggacatgccattcccccgccccaatcc
aacgcatcccgccaccccctcggtttccatcaaggggatacggctcggggagcgagacct
ccttttccgaagatcgacgcacgtttcgtccccacgcaagtgcatcaacgacagaaagcc
aaggcaccgcgggaggtggtcactgtgcctgttggtgagacagccacggtcccaacccca
atgaaggtggccccgagggtcgaggaatgggtgcaggagtcggtggccagctcggttaac
agtaacaacaacggtcaaggtcgtggacgtggtcgaagcgccacgagaggaggaggcaga
ggtggtcgaggtggaatcaacagagctcaaaagagaggccgaatcgcggcgaacttcggc
cgtggtcaaacctaa
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