Tigriopus californicus (tidepool copepod): 131877177
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Entry
131877177 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131877177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131877177
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131877177
Spliceosome [BR:
tcf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131877177
Complex B
131877177
Complex C
U2 SnRNP specific factors
131877177
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-GeneID:
131877177
NCBI-ProteinID:
XP_059078764
LinkDB
All DBs
Position
2:complement(10513083..10516961)
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AA seq
845 aa
AA seq
DB search
MRRGSSGRGGLYASFVSSSSSSSSSSRPSSTSDSLNRPYRGAEIPPPSNLSSSARRGGGF
PPPACLDSRAGPAASSGLSVQDRASFNNPTPGISKHGYSSISSINASHLSWQETPIKKQR
TEEEYFNDDDEEDLSAKKRKSQSDEMDLPYQPAPGSPGAAAAKEESDSEEDPLDAFMANL
EQDVKKRGLNKVEASVTASSTATKKPKEMKGTRVDIEEADDEESYYKWLEDNPNAGRGPE
DEDLAVEYDADGNPINPPHSKYIDPLPPIDHHAIKYEPFEKNFYNEHPDIASLSIIQVLD
LQQKLGLNISGAIPPKPVTSFGHFGFDEPLMKAIRKSEFTQPTPIQAQGIPALLSGRDVI
GIAKTGSGKTAAFLWPMLVHIMDQPRLSRGHGPIGLILVPTRELATQIYSEAKKFGKVYD
LKVVCAYGGGSKWEQSKDFESGAEIAIATPGRMIDLIKMKVTNLERVTYLILDEADRMFD
MGFETQVRSICDHVRPNRQCGLFSATFKKRIERLARDSLSDPIKIVQGSIGEASEDVKQI
VKVMEVGGFKWNWLLNNLVEFTSTGSVLIFVTKKQNCEELAHNLHLKQIECRCIHGDLHQ
SERNEIIQKFKKKEFDILVATDVAARGLDISHIRTVVNFDVARDIDTHTHRVGRTGRAGI
KGKAYTLITEKDKEFAGHIVRNLEAANQDVSKDLMDLAMKSSWFRNSRFKRGRGKGCQVD
RPGLGMGSSSSSSSSTLSSFPALGHEQYAYGDSSAPKEVTASGESRISGLKMAFKHQYMS
KFQKASNSEESDIGPAGVHPSIQEQMMPPPPGIGSPLAPQPQPPPSSMGSTNDAPRERKR
KSRWE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtggatcatcagggcgtggcggtctgtacgccagttttgtctcctcctcctcc
tcctcgtcgtcgtcatcgcgaccgtcgtcgacctcagattcgctgaatcgaccttatcga
ggggcggaaatcccgccgccgtccaatttgagctcatcagcacgacgaggaggtggattc
ccgcccccagcctgcctagattcacgggctggtcctgcggctagtagcggtctgtccgtc
caagaccgcgctagtttcaacaacccaaccccaggcatcagtaaacacggatactcgtcg
atatcgtcaatcaatgcgtctcatttgagttggcaagagacgcccattaaaaagcaacgc
accgaagaagagtacttcaacgacgatgatgaagaagacctatccgccaagaagcgcaag
agtcaatccgatgagatggacttaccttaccaacccgctcccggatcgcccggagcggca
gccgctaaagaggagtccgattccgaagaagaccccttggacgccttcatggccaatcta
gagcaggatgtcaagaaacgcggcttgaacaaggtcgaggcttcggtcacggcttcttcc
acggccacgaagaaacccaaagagatgaaaggcacgcgcgtcgacattgaagaggctgac
gatgaggagtcctattacaaatggctggaagacaatcccaatgccggtcgcgggcccgaa
gacgaggacctggccgttgaatatgacgccgatgggaacccgatcaacccgccccatagc
aaatatatcgacccgctcccacccatcgatcaccatgccatcaaatacgaacccttcgag
aagaacttctacaacgagcatccggacatcgcctccctcagtatcatccaagtcctggac
ttgcagcaaaaactcggtctcaacatctcgggagccattccgcccaaacccgtgacgagt
ttcggccatttcggattcgacgagccgctcatgaaggccattcgcaagtctgaattcact
cagcccacgcccatccaggcccaaggcatcccggccctcctctctggacgggacgtgatc
gggatcgctaagacgggctcgggtaagacggccgcgttcctctggcccatgttggtccac
atcatggatcaacctcggctgagcagaggtcatggtcccattggtctgatcttggttccc
acgcgagaattggccactcaaatctattcggaggccaagaagttcggcaaggtctacgat
ttgaaagtggtatgcgcttatggaggcggttcgaaatgggagcaatccaaggattttgaa
tcgggggcggagatcgcgattgccactcccggtcggatgatcgacttgatcaagatgaag
gttacgaacctggagcgagtgacctatttgatcttggatgaggcggatcggatgttcgac
atgggctttgagactcaggtgcggtcgatttgcgatcatgttcgacccaatcgccaatgc
ggattgttcagtgccaccttcaagaagcgaatcgagcggttggcccgggattcgctgtcc
gatccgatcaagatcgtgcaaggatccattggtgaggcctccgaggatgtgaagcaaatc
gtgaaagtcatggaagtgggcgggttcaaatggaattggctgctcaataacctggtggag
ttcacttctaccggctcggtattgatattcgtgacaaagaagcagaattgcgaagagttg
gcgcacaatttgcacctgaaacagatcgaatgtcgatgcattcacggggatcttcaccaa
tccgaacgtaacgagatcattcagaagttcaaaaagaaggaattcgatatcctagtggcc
accgacgtggcagctcgaggcttagacatttcccacatccgtaccgtggtcaactttgac
gtggcccgagatatcgatacccacacccaccgagtgggccggaccggtcgagccggcatc
aaaggcaaagcatacaccctcatcaccgagaaagacaaggaattcgccggacacattgtc
cgaaatctcgaggctgccaatcaggatgtgtccaaggatctcatggacttggccatgaag
agctcttggttccgcaattcccggttcaaacgcggtcgaggtaaaggttgtcaggtggat
cgacccggtttgggcatgggctcgtcttcgtcgtcttcttcttcgactttgtcatccttc
cccgccctcggtcatgagcagtacgcctacggagactcatccgcccccaaagaagtgact
gcttcgggtgagagtcggatatcgggcttgaagatggcctttaagcatcagtacatgtcc
aaattccaaaaggcatccaatagtgaggagagcgatatcggtcccgccggggtccacccc
tccattcaagagcaaatgatgcccccgcccccgggcataggctcgcccctagccccccag
cctcagcccccgccatcttcgatgggctcgacgaatgatgctcctcgagaacgaaaaaga
aagtctcgatgggaatga
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