Tigriopus californicus (tidepool copepod): 131877244
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Entry
131877244 CDS
T09700
Name
(RefSeq) syntaxin-binding protein 5-like
KO
K08518
syntaxin-binding protein 5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131877244
Membrane trafficking [BR:
tcf04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
131877244
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
131877244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_HPS5
Lgl_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Synaptobrevin
EIF3I
Beta-prop_VPS8
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
131877244
NCBI-ProteinID:
XP_059078842
LinkDB
All DBs
Position
2:complement(7698770..7709147)
Genome browser
AA seq
1177 aa
AA seq
DB search
MKKFVNIKGVLDNIRQSVNTPSPTGVGTPGGPVRLEQDICETLSADKFMVENTLRHGFPF
KPTCMAFDPIQKLLAIGNRTGCVRIFGRPGIDYEIQHESDRGGDPPQVMQVEFIINQGRL
LTACTDNSINLWEFKTKQPELLQTLKLNKERLVLMQLEFQDKWLYFATERGNVMIINLET
FTLSGYQINWNKCMGPLDKNHPGTIVHLSVNPVDTSKLLIGFETGLICLWDLSVKKADQR
FCHNRRLLTACWHLEGRQFVAGYSDGSLITWSVKATNSNGGKSVQFPHKKKDKDTNKMTP
CGPIEKVLWRVNRNGGEYFVFSGGLPSDVTGVTPSITIIQGKNSEMDIVEMENSVLDFLL
ATDSPYMADYQDPEAVIVMLSNDLVALDCKSSKIPCFKNPYAMDFNESPVTFCHYLVDCP
GDLIPNLYMVGSKAKKEGSSRGFSSGEWPISGGVDTGAESCSYSELVVTGHADGSVRFWD
SSSTTMQALYRVKTAKYFERTKKAQADGAMDEDPYQICHIILSPTTRELAVAGISGQVLF
FRFKKKETTTETKSMDIPIVYEVSSSQGQSMRGGGGGGAEISSPATNQHFEFPTPKPLLN
VASQSAAYTDPVDGFNFDKPQYEYFTPLRLRVGAQRKNPGYHAELICMTPWVNNEAPTPI
SCLTLSSNFGLMAYGNGSGIVIVDVVQFQCLLNMGTADLYGALDPFQRMPKSPKFPDSGP
DIVRVDLSNYNQVGEPSATTPNSSFKDPVGGMPSSRAVDRVKTPETKKLLQKAGSSADDS
SMSKSHSSSMNSLDQMITNEGVTTVAFADSFSSKNDFTFNSCLYVGTSLGSLIAIIINLP
DRGDARLSEPVVVSPSGSLYRLRGAVLTTCFLDASSSSLKVRGDEAPENVHIPSRPNHSG
GISNQASSPPIVNQGSQDERASPGGSNSPHSGDQQIMIVCTEKGAASYALPSQRQMYQQT
INESCPVVCAKIINFGGSKYTPCLVAYTADGFIKAYSLPSLRPMMDVYFMALSSERVRRT
MSFSNYGHGMYLCNATEVQKFTISSEFVRQLPDMQGSVFQEGIPMPEPPKPGFLKGLGLF
GGTPKPLDREELFGETAGKAPSHAATVTLGASMQAAQSKAINTSTEVGRARQGFEERGQR
LNELEDRTEAMANEAKQYASNAHTLMLAAKNKKWYQL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttgtcaacatcaagggtgtcttggacaatattagacagagtgtcaacacc
ccttctccaacgggggtgggaaccccgggtggcccagtcaggctcgagcaagacatctgt
gaaaccttgtctgcggacaagtttatggttgaaaacaccctccgccatggctttcccttc
aaaccgacttgcatggcttttgatcccattcagaagcttttggccatcggtaatcgcact
ggctgtgttcgtatatttggccgacccgggatcgactacgagatccagcacgaaagtgat
cgaggtggagatccgccacaagtgatgcaagtggagttcattatcaatcaaggtcggctt
ttgacggcttgcacggataactcgatcaatctttgggagttcaaaaccaagcaacccgaa
ttgttgcaaacgctcaagctcaacaaagaacgactggttctcatgcaactcgagttccaa
gacaaatggttgtattttgccaccgagcgaggcaacgtcatgatcattaacctggagacg
ttcactctctcaggatatcaaatcaattggaacaagtgcatgggtcctttggacaaaaac
cacccaggaacgattgttcacttgagcgtgaatccggtggataccagtaaacttctcatc
gggttcgaaaccgggctcatctgtctttgggatttgtccgttaaaaaggcggaccaaagg
ttctgtcataatcggagactcctgaccgcttgctggcatctggaaggtcgccaatttgtg
gccggctattcggatggatcacttattacttggagcgtcaaggccaccaactccaacggg
ggaaagagtgttcaattcccgcacaagaagaaggacaaggacacgaataagatgaccccc
tgtggccccattgaaaaagtgctgtggcgagtgaatcgtaatggaggagagtattttgtc
ttctccggagggcttccttcggatgtgacgggggtgaccccttccataaccataattcaa
ggcaaaaactcggagatggatattgtcgagatggaaaattcagtgctagattttctgctt
gccacagattcgccgtacatggcagattaccaagaccctgaggctgttattgtcatgctc
tccaatgatttggtggccttggattgcaagagttcaaaaatcccttgcttcaagaaccca
tacgccatggatttcaacgagtcccccgtgaccttttgccattatttggtggattgccct
ggcgacctcattcccaacttgtacatggtagggagcaaagccaaaaaagagggctcctct
cgtggattctcttccggtgagtggccaatctctgggggtgtggatactggagcggaatca
tgtagctacagtgagttagtggtgacaggacacgccgatgggagtgtgcgattttgggat
tcttcttccacgactatgcaagctctgtatcgagtcaaaacggccaagtacttcgagagg
accaagaaagctcaagctgacggcgccatggacgaggatccgtatcaaatatgtcacatc
attctgagcccgaccactcgggagctggctgtggccggcatcagtggccaggtgctgttt
ttcaggttcaaaaagaaagaaaccaccaccgagacaaaatccatggacatccccatcgtg
tacgaggtgtcttcatcccaaggtcagagcatgcgcggaggtggaggagggggagcagaa
atttcctccccggccaccaatcagcattttgagttccccactcccaaacctttacttaac
gtagcgtctcaatctgccgcttacaccgatcccgtggacggtttcaattttgataaaccc
caatatgagtacttcacccctttacgcttacgtgtaggtgctcaacggaaaaatcctggt
taccatgctgagctcatttgcatgaccccttgggtgaacaacgaggctccaacccccatt
agttgtttgactctgagctccaattttggattgatggcctacggtaacggctcagggatc
gttattgtagatgtggttcaattccaatgtctcctgaacatgggcactgcagatctgtat
ggggccctggaccctttccaacgaatgccgaagtctcccaagttccctgacagtggtcct
gatattgtcagagtggacctgagtaactacaaccaggtcggagagccctctgccaccact
cctaattcatccttcaaggatccagtcgggggtatgccctcttcccgagctgtggaccga
gtcaagactccagagaccaagaagctacttcaaaaggctggaagctcggccgatgacagc
agcatgtcaaaatctcatagctcctcaatgaatagtctcgaccagatgataaccaacgaa
ggggtcactacggttgccttcgccgactcgttctcctccaagaatgacttcactttcaat
agttgcctctatgtgggcacttcattgggctctctgatcgctattatcattaatttgcct
gatcggggagatgcgaggctctccgaaccagtggttgttagtccctcgggttccctctac
cgcctgagaggcgctgtactgaccacatgctttttggatgcgagctcttcgtctttgaag
gtgcgtggtgatgaagcccctgagaatgttcacataccatcaagaccaaaccactctggc
ggcattagcaatcaggcctcttcccctcccatcgtcaaccaaggcagtcaagatgaaagg
gccagtccaggagggtccaactccccacattctggtgaccagcagatcatgatagtgtgc
acggagaaaggtgctgcctcatatgctcttccctctcagcgtcaaatgtaccaacaaacg
atcaacgaatcttgtcccgtggtttgcgcaaagatcatcaactttggaggctccaaatat
acaccgtgcttggtggcatacactgcagatggtttcatcaaggcttatagccttccttca
ttgcgccctatgatggatgtctactttatggccttatctagcgaacgcgtgagacggacc
atgagtttttccaactatggccacggtatgtacctttgcaacgcgactgaagttcaaaaa
ttcaccattagctccgagtttgttcgccaactcccggacatgcagggctcagtgtttcaa
gaagggattccgatgcccgagccacccaagccgggttttctcaaagggctgggcctcttt
ggcggaacacccaaaccattagacagggaggaactgtttggagagaccgctggcaaagca
ccttctcatgctgcaactgtgacattgggtgcaagcatgcaagctgctcaatccaaagcc
atcaacacgtcaaccgaagtgggacgagctagacaaggctttgaggagcgaggacaacga
ctcaatgaattggaagaccgcacggaggccatggccaacgaggctaaacaatatgcctcc
aacgctcacactttgatgttggctgccaaaaataagaaatggtatcagctctaa
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