Tigriopus californicus (tidepool copepod): 131877314
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Entry
131877314 CDS
T09700
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131877314
09122 Translation
03013 Nucleocytoplasmic transport
131877314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131877314
03041 Spliceosome [BR:
tcf03041
]
131877314
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
131877314
Spliceosome [BR:
tcf03041
]
Complex C
Other components
EJC/TREX
131877314
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131877314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
COX4
Motif
Other DBs
NCBI-GeneID:
131877314
NCBI-ProteinID:
XP_059078907
LinkDB
All DBs
Position
3:7854754..7862298
Genome browser
AA seq
1464 aa
AA seq
DB search
MMEESQWHNWEKTGQTEFGKLFQRGVTAWTNAGRPPNVDLGLKRLVYDLVVRCIRDQGVK
RDHVVQFIGEKCVSHAELSNMWVDVFALLDNETSLMAKDRREERERFVRLFREAEKYLST
GHLKERIEVLETLEDIGVLKSTKKFFTSMIKLKTKLFYKQQKFNLFHEECEGFAKLLTEL
NQDLTTVSPKEVLETIKSIIGYFNLDPNRTLDIILESFECRLEHHRFYIHLLQEFVPDPQ
TLNELLAFKYKFYESECVDNGGKIPESLFTVTALLIQYDILDMDTIYGMLKPDDAEIESE
SDVGIKDAREFVRKMNVVSTNKGDKPDLTMADFQAIAATYDANQKLGLIEAFLRVGAWTH
AEKLMNRLPPYFAVSQEPIAKALQRLVHLTIQPLVQKCSNKSYKTFSSDLIPSSNQFSPI
LVDTFEQFKTVVMPMLMELGPHASSDLSLLYKIMRILKADLKTTFDETGRDREKTAEFSV
SPESCCLYYETITLTDAVLLPSLSLAESNCCLAEEIWSVLRVFPYHVRYHLFGQWKANTY
DAHPLLLRKKAITLKGIKRIMQRISKENVKPTSRLIGKITHSSPGLVFEYILSQIQLYDN
MITPVVDSLRYLTSLSFDVLGYSIIEALNNPEKDRTKHDGTSISLWLTSLSNFCGAVYKK
YNIELTGLLQYVANQLKNKHSLDLLIMKEVVLKMGGIEGAEEMTSEQIDAMAGGELLRQE
AGSFTQIKNTKKSSQRLKDALIDHDLAVPLCLLMAQQRNCVVYQETEDSHLKLVGKLFDQ
CQDTLVQFGTFLASNLSIDDYTRRLPPIQTLLSRYHVNLDLAFFLARPMFNHQISLQYEN
IRKNEKHRWKTISENEKQNLYVAATTDVMTPITEAIRPLHSVKIWDDISPQFLTTFWSLT
MYDLFVPEDVYGKEIQKLVLAPSKVDDNKELNSSRKKKEKERLHNMLEKIQDEQKKQKDH
VERVMARLKTEKDSWFFSRSARLAKNETITTFLQLCLFPRCIFTAIDAIYCAKFVQVIHM
LKTPNFSTLICFDRIFCDITYTVTSCTENEAHRYGRFLAAMLELVMKWHSKKEIFDEECV
GYPGFVTKFRVAQTEQKPGGGPGDSVDYENYRHVCHKWHYKIAKALVVCLESKDYVQIRN
ALTILFKILGFFPMLLPLAGVLERRIEKVVEEEKDKRMDLCIMARSYQGQLKAKRPHMML
ERDFHIPKEGKGGAGGGPKEGGDNTANDNSTKTSGGKSAKPEESRLSSERSSKSRSQSRE
NSLSRSNDEPASSVSSGGGKYKKNRDRDSKERSLGRDSSSRERSREPKTRHSSKDRERRE
EMGPPQSSTSHRRSAESESMERELKRRKPEDESGRRFKDRSRERSEDSDQGELTPPPKKE
KSSSKSDRKRERDEMVAANASSIDNNGTILKRSKKEDREGSSSMSSHRHGAENGGDEMAI
ADRKSGRANSRRGGGEPSKRKSTS
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaaagccagtggcacaactgggaaaagaccggccaaaccgaattcggtaaa
ttgttccaacgaggcgtgacggcctggaccaatgcgggccgcccgcccaatgtggacctg
ggtctgaagcgtctggtttatgacttggtggtccgatgcatccgcgatcaaggtgtcaaa
cgcgatcatgtggtccaattcatcggcgaaaagtgcgtgtcccacgctgaattatccaat
atgtgggtagacgtgttcgccctcttggacaacgaaactagtttgatggccaaggaccga
cgcgaagaacgcgagcgattcgtgcgattgttccgcgaggccgagaagtatctgtccacc
ggtcatctcaaggagcgtatcgaggtcttggagacactggaggacattggtgtgctcaaa
tccaccaagaagttcttcacatccatgattaagctcaagacgaaattgttttacaagcag
cagaagttcaatctctttcatgaagaatgcgagggcttcgccaagctgctcactgagctc
aaccaggacctgaccacggtctcgcccaaagaagtgctcgagaccatcaaatctatcatc
ggctacttcaacctggaccctaatcgcactttggacatcatcctcgagtcctttgaatgt
cgcctcgagcatcaccggttctacatccacctattgcaagagttcgtgccagatccacaa
acattgaacgagctcctcgctttcaaatacaaattctacgagtctgagtgcgtggataat
ggcggtaaaatccccgaatctctgttcaccgtcacggctttgctcatccaatatgacatc
ctcgatatggacacgatctatgggatgcttaagcctgatgatgcggagattgaatccgaa
tccgatgtgggcataaaagacgctagagaatttgtccgaaaaatgaacgttgtctctacc
aacaagggagacaagccggacctgaccatggccgatttccaggccatcgcagcaacctat
gacgccaaccagaaattgggtctaattgaggcctttctccgagtcggggcgtggacacat
gctgaaaagctcatgaatcggctaccaccatactttgcggtctcgcaggaaccgatcgct
aaagcgctccagagactcgttcatctcacgattcaacccttggtgcaaaaatgtagcaac
aaatcgtacaagaccttctcgagcgatctcatcccgtcatccaatcaattctcgcccatt
cttgtggacacgtttgagcaattcaaaacggtggtaatgccaatgctcatggagctggga
cctcacgctagctcggatctaagcctattatacaagatcatgcggatccttaaagctgac
ctgaaaacaaccttcgacgagacgggtcgggatcgagagaaaacggccgagttcagtgtt
tccccggagtcgtgctgcctctattatgagaccatcacattaacggatgctgttcttctg
ccctcgttgtctttggcggagagcaattgctgtttagccgaggagatctggagtgttctt
cgcgtgttcccctatcacgtcagatatcatttgttcggtcagtggaaggccaacacctac
gatgcacatcccttgcttttgcggaagaaggccatcacactcaaaggcattaagcgtatc
atgcagagaatcagcaaagaaaatgtcaagcccacctcacgactgattgggaaaatcacc
cacagctcgcccggattggtgtttgaatatatcttgagccaaatccaattgtacgacaac
atgattacgccggtggtggattccctccggtatctgacctcgctctcctttgatgttttg
ggctattccatcattgaagcattgaataaccccgagaaggatcgaaccaaacacgatggg
acgagcatttccctgtggctcacctctttatccaacttttgtggggccgtgtacaagaag
tacaacatcgagctcaccggcctcctccagtacgtggccaatcagctgaaaaacaaacac
agtctggacttgctgatcatgaaggaagtggtcctcaaaatgggtgggatcgaaggggca
gaggagatgacttcggagcaaatcgatgccatggctggcggagaactgttgcgacaagag
gccggttcgttcactcagatcaagaatacgaagaagagttcgcagcgcttaaaagacgca
ttgattgatcatgacctggcggttccgttgtgtctgctcatggcacaacagagaaactgt
gtggtgtatcaggagactgaagattcccacttgaagttggttggaaaactctttgaccag
tgccaagatacgttggttcagtttggcaccttcctcgcgtccaatctgtcgattgacgac
tacactcggcgattgcctcccattcagactctgctatcacggtatcatgtaaatctcgac
ctggctttcttcttggccaggcccatgttcaaccatcagatctcactacaatacgagaac
atccgaaagaacgagaaacatcgatggaagaccatctcggagaacgagaaacaaaatctt
tacgtggctgccaccaccgatgttatgacacctatcacggaggccatccgtcctttgcac
tccgtcaagatttgggatgacatctcgccacagtttctaaccaccttttggtcactcacg
atgtacgacttgtttgttcccgaggatgtttatggaaaagagatccagaaattagtgctt
gctccgtccaaggtggatgataacaaggagctgaactcttcgagaaaaaagaaggagaaa
gagcgacttcataacatgttggagaagatccaggacgagcaaaagaagcagaaggatcac
gtggaacgcgtcatggcccggctgaagaccgagaaggactcttggttcttctcgagatcc
gcacgcttggccaagaatgaaaccatcaccacatttctccagctgtgcttgtttccacga
tgcatctttacggctattgatgccatctactgtgccaagttcgtgcaagtgatccacatg
ctcaaaacgcccaacttctcaaccttgatttgctttgacagaatattttgtgatattacc
tacaccgtcacatcatgcacagagaacgaggctcatcggtatggtcgcttccttgcagcc
atgctggagctggtcatgaaatggcattcgaagaaggagatcttcgacgaggagtgcgtt
ggttacccggggtttgtgaccaaattccgcgtggctcagaccgaacaaaagcccggaggg
ggtcccggagattccgtggattacgagaattatcgccatgtttgccacaagtggcattac
aaaattgccaaagcccttgttgtttgtctggaatcaaaggactacgtccagattcggaat
gctttaacgatccttttcaaaattttgggattctttcccatgcttctccctctggctgga
gtgcttgagaggcgcatagaaaaggtggttgaggaggaaaaagacaaacgcatggatttg
tgcatcatggctcgaagttatcaaggacagctcaaggccaagcgaccgcatatgatgctt
gaacgagactttcacatcccaaaagaaggcaaaggaggtgcgggtggtggtcctaaggaa
gggggagataacacagctaacgacaatagcaccaaaacctcgggtggcaaatcggccaag
cccgaggaatcacgcctctcctcagaaagatcgtccaagagccgaagccaaagtcgagag
aattcgctctctcgaagcaatgacgaaccagcctcatcggtctcatctggaggcggaaag
tacaagaaaaatcgggaccgagattccaaggaacgcagtctcggacgggattccagctcc
agggagcggtcgcgtgaacccaagactcgccattcctccaaagatcgggagagaagagaa
gagatgggacctccgcaatcctctacttctcatcgtcgcagtgcagagtctgaatccatg
gaacgagaactgaaacgccgcaagcccgaggacgaaagcggtcgccggttcaaggaccga
tcccgcgaaaggagcgaggacagcgatcaaggcgagctgaccccacctcccaaaaaggaa
aagtcctcgtccaaaagcgaccggaaacgcgaacgcgacgaaatggttgcggcgaatgcg
tcctctatagacaacaacggcacgattctcaagagaagcaagaaggaggatcgggagggt
tcatcctcaatgtcttcgcatcgacatggagcagagaatggtggggacgagatggccata
gcggatcggaaatccggtcgggccaactcacgtcgaggtggcggtgaaccatccaaacgc
aagtcgacctcctaa
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integrated database retrieval system
