Tigriopus californicus (tidepool copepod): 131877356
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Entry
131877356 CDS
T09700
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcf03009
]
131877356
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131877356
Ribosome biogenesis [BR:
tcf03009
]
Eukaryotic type
Pre-60S particles
Helicases
131877356
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Col_cuticle_N
Motif
Other DBs
NCBI-GeneID:
131877356
NCBI-ProteinID:
XP_059078967
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All DBs
Position
3:complement(3092327..3094650)
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AA seq
564 aa
AA seq
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MAQVRFAATPSVVQPAPESEDVPPLPFHEMGLDDRLLKAIAQCGWAQPTLIQERAIPLIL
EGQDVLARGRTGSGKTGAFAIPTLQKILQAKATATQQSVRALMLAPSRELARQIHANVLA
LSASCGRVIRAVDVSGAGELESQRPLLAELPDIVVGTPARVLAHLRAGHVDVRASLDILV
IDEADLIFSFGYEADIKAILPFLPSVVQTVLTSATLTEDVLKLKKLILHNAVTLKLEEPS
LPEASQLTQYQIKLEEEDKFILIYALFKLKLIQGKSIIFVNSVDRCYKIKLYLEQFQIPV
CVLNSELPVTTRCHVVSQFNRGLYDVIVASDEKFLDEQHYTGKVDHDKERSQRKKDKESG
VARGIDFQFVSNVINFDFPADVDSYIHRVGRTARGNNKGTALSLVSGRELALSNEVENYL
KEQMGVEGEEEHVFKPYKFRMQELDGFKYRARDAWRAVTKIAIREARLKEIKHEMLNSAK
LRAHFEVNPKDAQILRHDKALHTVKHQAHLKNVPDYIVPQALKKVVHVNPRNKRSNNPLS
RPMSQAKRKYEMSKRDPLKNLKKK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcccaagttcgatttgcggccacgccctcagtggtccagcccgcccctgagtccgag
gatgtcccgccgttgccctttcacgaaatgggattggacgatcgtttactcaaggccatc
gcccaatgcggttgggctcagcccaccttgattcaggaacgagccattccgctcatcctg
gaaggtcaggatgttttagcccgtggtcgcacgggcagcggcaaaaccggtgccttcgcc
attcccactttacagaagatcctacaggccaaagccacggccacccaacagagcgtgcgc
gcgctcatgctcgcgccctcgcgcgaactcgctcgccaaattcacgctaacgtgctggcc
ctgagtgctagctgcgggcgcgtcattcgggccgtggacgtgtcgggagcgggcgagctc
gagtctcagcgtcccttattggccgagttgcccgatattgtagtgggcacgccggcccgc
gtcctagcccatttgcgggccggccatgtggacgtgcgagcttcactcgacatcctggtc
atcgatgaagccgacttgattttctctttcggctatgaagccgatatcaaggccattctt
ccgttcttgccctcggtggttcagaccgtgctcaccagtgccactttgaccgaggatgtg
ctcaagttgaagaagctcatcctccacaacgccgtgacattgaagttggaggagccctca
ctcccggaagcctcgcaattgacgcaataccagatcaaactcgaagaagaagacaagttc
atcttgatctacgccttgttcaagctcaagctcattcaaggcaagagcatcatcttcgtc
aacagcgtcgatcgttgctacaagatcaaactctatttggagcaattccaaattccggtg
tgcgtgctcaactcggaattgcccgtcaccacccgttgtcacgtggtcagtcagttcaat
cgcggtttatacgatgtgattgtggcatcggacgaaaagtttctcgacgagcaacattac
acgggcaaagtggatcacgataaagagcgcagtcaacggaaaaaagacaaggaatccggc
gtggctcgcgggatcgacttccagtttgtgtccaatgtgatcaatttcgatttccccgcc
gatgtggactcgtacattcatcgtgtgggacgcacggctcggggcaacaataaaggaaca
gctttgtctttggtgtctggccgagaattggccttatccaacgaggtcgagaactacttg
aaggaacagatgggcgtggagggtgaagaagaacacgtgtttaagccttacaagttccgc
atgcaagagttggacggattcaaataccgcgcccgcgatgcttggcgagccgtgaccaag
atcgccatccgcgaagcgcggcttaaagagatcaagcacgaaatgctgaactcggccaaa
cttcgcgctcactttgaggtcaaccctaaggatgcccaaatattgagacacgataaagcg
ttgcacacggtcaaacatcaggcccatctgaagaatgtgccggattatattgttccacaa
gcccttaagaaggtggtacacgtcaatcctaggaacaagcggagtaacaatcctttgagt
cgacccatgtctcaagccaaacgaaaatacgaaatgagtaagcgcgacccactcaagaat
ttgaagaaaaaatga
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