Tigriopus californicus (tidepool copepod): 131877445
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Entry
131877445 CDS
T09700
Name
(RefSeq) periodic tryptophan protein 1 homolog
KO
K14791
periodic tryptophan protein 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcf03009
]
131877445
Ribosome biogenesis [BR:
tcf03009
]
Eukaryotic type
90S particles
Other 90S particles
131877445
Pre-60S particles
Other pre-60S particles
131877445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_EML_2
ANAPC4_WD40
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_EML
Beta-prop_DCAF12
Beta-prop_WDR75_1st
Beta-prop_IFT122_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_SCAP
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
131877445
NCBI-ProteinID:
XP_059079100
LinkDB
All DBs
Position
3:4366020..4368456
Genome browser
AA seq
561 aa
AA seq
DB search
MDGVDELEKGDPNINFVPCLKWIRRGMAQAQPEKLKLSPEELAEVIAQTQAQITGMENQN
QDEDDDDVEDDQDDENEDEADDQSVENTQDTDSAPQHPPLNEDERIAQEYAMDDYDQEDP
DDNAGSLGLGRLVTFADPRQDPYLQDPDLDDDDSDVEDMIIKPTDNLLAVGHIEGDAPTL
EIYVYNDVEDAFYVHHDVLLPSFPLALEWLSYDPGEETGGNFMAVGTMEPVIDVWDLDVV
DGLEPAYRLGQKGQKKKKIKAVGHKDAVLALAWNHHVEYILASGSVDQSVLLWDLSGGQV
KHQLNAHMEKVQALQWHPFESNNLLTGCCDKKARVFDCRGSEFKAWQVEGEVEKVVWNHF
NPFTFLVATDTGYVQMIDVRQEKAPIWTLQAHSEGVNGLSLSTQCPDMMVTVSSDRTMKV
WDIANHKPGCVQERAMALGQIHCLENCPDAPFVMCMGGDEPSNNLKVLDIRESASVRHRF
GERKLTNPLKTSNFGYSTINEAEPDPSPETTVDAEMASDALEAMALETESITVIQPPVVS
GGAVGKFKKKEKKKNKKKKEF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgtggatgaactcgagaagggtgatcccaacattaactttgtgccttgtctc
aaatggattcgccgaggcatggcccaagcccaacccgaaaagctgaaattgtcgcccgag
gaattggccgaagtgattgctcaaacgcaagctcaaatcacggggatggaaaatcagaac
caagacgaggatgacgacgatgtcgaggatgaccaggatgacgagaatgaggatgaggca
gacgaccaaagtgtcgagaatacccaagatactgattccgcccctcagcatcctccgctc
aacgaagacgaacgcatcgcccaagagtacgccatggatgattatgatcaagaggacccg
gatgacaatgcgggtagtcttggcttagggcgtttggtcacattcgctgatccacggcaa
gacccatatctccaagatcccgacctagatgatgatgatagcgatgttgaggacatgatc
atcaagcccaccgacaatctgttggccgtcggtcacatcgaaggcgacgcacccaccctt
gaaatatacgtttacaatgatgtggaagacgctttctacgtgcatcacgatgtactcttg
ccctcgtttcccttggccttggagtggctgagttatgatcccggcgaagagaccggtggt
aatttcatggcggtgggcaccatggagcccgtgattgatgtatgggatttggacgtcgtg
gatgggctcgaacccgcttatcgtttgggtcagaaaggccagaagaagaagaagatcaaa
gcggtgggacataaagatgcggtgctcgctttagcttggaatcatcatgtcgagtacata
ttggctagtggcagcgtcgatcaaagtgtcttgctttgggatttgagcggcggtcaggtc
aaacatcaactcaatgcccatatggagaaagtccaagctttacaatggcatccgtttgag
tccaataacttgctaactggttgttgcgataaaaaagctcgcgtgttcgattgccgtggg
tccgaatttaaagcttggcaagttgaaggtgaagtcgagaaagtagtatggaaccatttc
aatccattcacatttttagtagccacagatactggttacgtacaaatgatcgatgtccgc
caggagaaggcccccatttggacgttgcaggcgcattccgagggtgtcaatggcttgagc
ctgtcaactcaatgtccggatatgatggtgaccgtgtccagtgatcggaccatgaaggtc
tgggacattgccaatcacaaaccaggttgcgtgcaagagcgagccatggcgttgggacaa
atccattgcctggaaaattgcccggacgctccgtttgttatgtgcatgggcggggacgaa
ccatccaacaatttgaaggtcttggacattcgagaatcggcatctgttcgacatcggttc
ggggaacgcaaattgaccaatccattaaagacctctaattttggctacagtactattaat
gaagccgaacccgatcccagcccagagactacggtcgacgccgagatggccagtgatgcc
ttagaagctatggctttggagaccgagagcataaccgtgatccagcccccggtcgtgagc
ggtggagccgtgggcaaattcaagaagaaagaaaaaaagaaaaacaaaaagaaaaaagag
ttttga
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