KEGG   Tigriopus californicus (tidepool copepod): 131877445
Entry
131877445         CDS       T09700                                 
Name
(RefSeq) periodic tryptophan protein 1 homolog
  KO
K14791  periodic tryptophan protein 1
Organism
tcf  Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tcf03009]
    131877445
Ribosome biogenesis [BR:tcf03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    131877445
  Pre-60S particles
   Other pre-60S particles
    131877445
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 EIF3I Beta-prop_EML_2 ANAPC4_WD40 WD40_WDHD1_1st Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_DCAF12 Beta-prop_WDR75_1st Beta-prop_IFT122_2nd Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 131877445
NCBI-ProteinID: XP_059079100
LinkDB
Position
3:4366020..4368456
AA seq 561 aa
MDGVDELEKGDPNINFVPCLKWIRRGMAQAQPEKLKLSPEELAEVIAQTQAQITGMENQN
QDEDDDDVEDDQDDENEDEADDQSVENTQDTDSAPQHPPLNEDERIAQEYAMDDYDQEDP
DDNAGSLGLGRLVTFADPRQDPYLQDPDLDDDDSDVEDMIIKPTDNLLAVGHIEGDAPTL
EIYVYNDVEDAFYVHHDVLLPSFPLALEWLSYDPGEETGGNFMAVGTMEPVIDVWDLDVV
DGLEPAYRLGQKGQKKKKIKAVGHKDAVLALAWNHHVEYILASGSVDQSVLLWDLSGGQV
KHQLNAHMEKVQALQWHPFESNNLLTGCCDKKARVFDCRGSEFKAWQVEGEVEKVVWNHF
NPFTFLVATDTGYVQMIDVRQEKAPIWTLQAHSEGVNGLSLSTQCPDMMVTVSSDRTMKV
WDIANHKPGCVQERAMALGQIHCLENCPDAPFVMCMGGDEPSNNLKVLDIRESASVRHRF
GERKLTNPLKTSNFGYSTINEAEPDPSPETTVDAEMASDALEAMALETESITVIQPPVVS
GGAVGKFKKKEKKKNKKKKEF
NT seq 1686 nt   +upstreamnt  +downstreamnt
atggatggcgtggatgaactcgagaagggtgatcccaacattaactttgtgccttgtctc
aaatggattcgccgaggcatggcccaagcccaacccgaaaagctgaaattgtcgcccgag
gaattggccgaagtgattgctcaaacgcaagctcaaatcacggggatggaaaatcagaac
caagacgaggatgacgacgatgtcgaggatgaccaggatgacgagaatgaggatgaggca
gacgaccaaagtgtcgagaatacccaagatactgattccgcccctcagcatcctccgctc
aacgaagacgaacgcatcgcccaagagtacgccatggatgattatgatcaagaggacccg
gatgacaatgcgggtagtcttggcttagggcgtttggtcacattcgctgatccacggcaa
gacccatatctccaagatcccgacctagatgatgatgatagcgatgttgaggacatgatc
atcaagcccaccgacaatctgttggccgtcggtcacatcgaaggcgacgcacccaccctt
gaaatatacgtttacaatgatgtggaagacgctttctacgtgcatcacgatgtactcttg
ccctcgtttcccttggccttggagtggctgagttatgatcccggcgaagagaccggtggt
aatttcatggcggtgggcaccatggagcccgtgattgatgtatgggatttggacgtcgtg
gatgggctcgaacccgcttatcgtttgggtcagaaaggccagaagaagaagaagatcaaa
gcggtgggacataaagatgcggtgctcgctttagcttggaatcatcatgtcgagtacata
ttggctagtggcagcgtcgatcaaagtgtcttgctttgggatttgagcggcggtcaggtc
aaacatcaactcaatgcccatatggagaaagtccaagctttacaatggcatccgtttgag
tccaataacttgctaactggttgttgcgataaaaaagctcgcgtgttcgattgccgtggg
tccgaatttaaagcttggcaagttgaaggtgaagtcgagaaagtagtatggaaccatttc
aatccattcacatttttagtagccacagatactggttacgtacaaatgatcgatgtccgc
caggagaaggcccccatttggacgttgcaggcgcattccgagggtgtcaatggcttgagc
ctgtcaactcaatgtccggatatgatggtgaccgtgtccagtgatcggaccatgaaggtc
tgggacattgccaatcacaaaccaggttgcgtgcaagagcgagccatggcgttgggacaa
atccattgcctggaaaattgcccggacgctccgtttgttatgtgcatgggcggggacgaa
ccatccaacaatttgaaggtcttggacattcgagaatcggcatctgttcgacatcggttc
ggggaacgcaaattgaccaatccattaaagacctctaattttggctacagtactattaat
gaagccgaacccgatcccagcccagagactacggtcgacgccgagatggccagtgatgcc
ttagaagctatggctttggagaccgagagcataaccgtgatccagcccccggtcgtgagc
ggtggagccgtgggcaaattcaagaagaaagaaaaaaagaaaaacaaaaagaaaaaagag
ttttga

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