Tigriopus californicus (tidepool copepod): 131877730
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Entry
131877730 CDS
T09700
Name
(RefSeq) cholesterol transporter ABCA5-like isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
131877730
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcf02000
]
131877730
Transporters [BR:
tcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
131877730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_23
AAA_15
SMC_N
AAA_29
MMR_HSR1
RsgA_GTPase
GTP_EFTU
FeoB_N
Motif
Other DBs
NCBI-GeneID:
131877730
NCBI-ProteinID:
XP_059079473
LinkDB
All DBs
Position
3:831629..856342
Genome browser
AA seq
1784 aa
AA seq
DB search
MEGRTRREASFYQQFRATLIRNLLRKKRALRHTLREILAPIYFLAIIIILKLAIPEPFYA
QVDQPQPPIEVFSTFPFQYTERADLIIIPSDLENHEFMLQLQNNPTLKIANFTFLDSEED
LEQLFDQDPNQIYAAIIFNDYSLDTLDYQIRFSSQDPIYALPGSYSKIGGNTECRVKGKP
TANQKELGLSAFFPIRKRMLGNLGGKMSRQIRSVEQDEGPYTKIQDGPDSLFGFPAPCSV
GTYYWSGFSTIQAVIDNEWMKFQLAKSGETFTFPKIALQMMPKHEFTGTAAVILRSIIPL
YLVISLSQFITPMLIVVVDEKEKKIKESMKMVGLRDSVFWLSWFAVYSVMVLIIAIIGSV
LVYFVVIKSTNFWVLFVLMFEFGLSMIMFAFMLTSLFSKAKPAGIVGGLSTMLLSCLYYL
QVFLSGSHEIIFWLLGLLSPTAFAMGVDKLMYFDLESKQLDLWDPADSIPVAGVMIMLAV
DIVLYLLIAFYLDNVVPTEYGTRRKPWYFLQPSYWKSSVNSALCARKSQVNDPDRMQKMR
SLIDESNFNGPDFEAIPSSMKGREAIVINQLKKTFKSLGSAPVHAVKDISLKIYPGEITA
ILGHNGAGKSTLFNMLTGMTSITSGSADIFGFDVTDSNQMEEIRKITGICPQHDVLFDEL
TPREHLTFFARIRGMEESEIPQEVESILKDTNLEEKADAVALNLSGGQKRKLSVGIALIG
DPKIIFLDEPTAGVDPYSRRHLWSVLKERKEGKVILLTTHFMDEADILADRKAIVSDGKV
RCYGSSLFLKNKFGVGYHLTLVLEPSGNISEIRELVKRFMPDAEQNRLFGRELSFILPRD
DVDKFPDLFSAIESDIDKNLSGISSYGVSMTTLEEIFLKLGEEEKAKKEVDELEMSGEAT
QAMISKQDVGKMNGSVAPTQHMANNQSNKEMGGFSFEAVPTEKSKWQMFWALAWVRFVRK
YREPVAVLVQIVLPVVYLVLGIWLTTLTSFDPPKEEPLIISPAIYEKDFPETADSAVFSI
WSPDGADLSGMVDRLNGSTLELGQTTQFNDLLSTMQMGAYKVKEFNEAAKSLDVTVLVNF
TSLHSVPIIINQISNIMADLHNLDSINTISHNFKHTSMAGDFDFGSFGGTIFIGFTYVLI
PIGLALELIEDREIRAKNQLRVNGLTFGLYYGSFYLVLGGMMLIVLAVLLGLVWAFQIAP
LTLMPAFLTLALLYLIYTPAALLFCSAISYLFDKVENGQFLFPIASYVGFIPYIAVSLLD
MFQVADGLVGKICHVVFAFLSPIYIPFGAVYYINRQFVFNLCGITTDCSEITFGNYMGQY
EIYTLFIACGFHLIVWFIVLKVADVVKDGGSVREGFSFLMKNNDKYKKIDQDRENVDMIE
DEDVDVRRERDEVNEYFAHNGESRVVAVQGLRKEFPTNEGKAEKTSISKESHKKVSNKLK
VAVRNMTMGVQPGEVFGLLGHNGAGKTTTMRIITAEEASTAGNVKIGKHNILSNASPGFD
MLGYCPQFDAVWKTITIREHLQVYAAIRGVAKPNIGRLTNQFMEGLQIEEHSNKYAKDCS
GGTKRKLSYAMAMLGDPKIVLLDEPSTGMDPQSKRFVWDTILASFKDDRGAILTTHSMEE
ADALCTRVGIMVKGALRCLGSTQHLKNRYGSGYMLEAKLKNEGGPEEALDQHWSTLEKEI
LNEFPGAVLQEKFADRRTYSIPQSAFSSLASAFKTLEHLKSTHDVEEYSFGQTTLEQVFL
EFAKQQEAADEEADSDEMEHPTNRLDGSQRSVSRTGSILPVTEL
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggagggcagaaccaggcgagaagccagcttctaccaacagttccgagccaccctgatt
cggaacttgttgaggaagaaacgcgcccttcgtcatacccttcgggaaatcttggctccc
atctacttcttggccattatcataatcttaaaactcgccattcctgagcctttctacgct
caagtggatcaaccacagcctcccattgaagtcttcagcactttcccatttcaatacacc
gaacgagcagatctgatcatcattccgtctgatctggaaaaccatgagtttatgctacag
ctccaaaataatccaactttaaagattgcgaatttcacctttctggattcggaggaagac
ttggaacaactatttgatcaagatccaaaccagatctacgccgccattattttcaatgat
tactcattggacacgttggattatcaaattcggttctcctctcaagatccaatttatgcc
ttaccgggttcttactcaaaaatcgggggcaacaccgaatgtcgagtgaaaggtaaacct
accgccaatcaaaaagaacttggtctttccgccttttttccgattcgcaaacgaatgctc
gggaacttgggtggaaaaatgagccgtcaaattagatcggtggaacaagatgagggtcct
tatactaaaatacaggatggtcctgattcgcttttcgggtttcctgctccttgcagcgtt
ggaacttattactggtcagggttttcaaccatccaagctgtcattgacaacgaatggatg
aagttccaattggccaagtcaggcgagacattcacgttcccgaaaatcgcccttcaaatg
atgcctaagcacgaattcacgggcacggcggccgtgattttgcgctcaatcatcccactg
tacttggtcatctcgttgtcccagttcatcacacccatgttgattgtggtggtggatgag
aaggagaagaaaatcaaggagagcatgaagatggtgggacttcgggattctgtattttgg
ctctcatggttcgctgtctactcggtgatggttctcattatcgccatcattggatctgtc
cttgtctactttgtagtgatcaagagcaccaatttctgggtgcttttcgtcctcatgttc
gagtttggattgtccatgatcatgttcgccttcatgctcacgtcactcttcagcaaagct
aagcccgctgggattgtgggtggattatccacgatgctcctgtcgtgcttgtactacttg
caagttttcctctctggatcccacgagatcattttttggttactgggcctgctgagtccc
acggctttcgccatgggggtagacaagctcatgtactttgatttggagtcaaaacagttg
gatctctgggatcccgcggacagtatccccgtggcgggcgttatgatcatgctagctgtg
gatattgttttgtacttgcttatcgcattctacttggacaacgtggttcctactgagtat
ggaacccgtcggaagccgtggtattttcttcaaccctcatactggaaatcgtctgtcaac
agcgccctctgtgccaggaaatctcaagtgaatgatcctgaccggatgcaaaagatgcgc
agtttgatcgatgaatccaatttcaatggacccgattttgaagccatcccatcatcgatg
aaaggccgtgaggctattgtgatcaaccaactcaaaaagaccttcaaatctttggggagt
gcacccgttcatgcggtcaaagacatcagtctcaagatctatcctggcgagatcacggcc
attttagggcataacggggccggtaaaagcaccttattcaacatgctcacaggaatgacc
tcaattacttcaggctcagccgatatttttggatttgatgtgacggacagtaatcagatg
gaagaaatccggaagatcactggaatttgccctcaacatgatgtcctctttgacgagctg
accccaagggagcatttgacgtttttcgccagaatccgaggaatggaagaaagtgaaatt
ccccaagaagtggagagcatcctgaaagacactaatttggaagaaaaggcggatgccgtg
gctttgaacttgtccggtggtcaaaagcggaaattgtccgtgggtatcgctttgattggc
gatcccaagatcatatttctggatgaacccactgctggtgttgatccctattcacgacga
catctctggtcagtcttgaaagaaaggaaagaaggaaaggtgattctcttgacaactcac
ttcatggatgaagcggacattttggcagatagaaaggccattgtgtcagatggaaaggtc
cgttgttacgggtcatctttgttcctcaagaataaatttggagtgggctatcacttaact
ttggttttggaaccaagtgggaacatctcggagattcgagaacttgtcaagcgtttcatg
ccggatgcagaacagaatcgactttttgggcgagaactctcgttcattttacctcgggat
gacgtggacaaatttccagacctgttttccgccatcgaatcggatattgacaagaatctc
tcgggcatcagcagctacggtgtttccatgaccactttggaggagatatttttgaaatta
ggcgaagaggaaaaggccaaaaaggaagtggacgagctagaaatgtcgggcgaagccacc
caggccatgatttccaaacaagatgttggcaagatgaatggttcggtcgcacccacccaa
cacatggccaataaccaaagcaataaggaaatgggcggattctcattcgaggctgtgcca
acggagaaatccaagtggcaaatgttctgggctttagcgtgggttcgttttgttcgcaag
tatcgagaacccgtagccgtactggtccagattgttctgcccgttgtgtatctggtcttg
ggcatttggctcaccactcttacttcattcgatcctcccaaagaggaaccacttatcata
tcgcctgccatctacgaaaaagatttccctgagacggctgattcggccgtgttttctatc
tggagtcctgacggggctgacttaagtggaatggtcgacagacttaatggatcaactttg
gagttgggacagacaactcaattcaacgatctattgtcaacaatgcaaatgggcgcttat
aaggtgaaggagttcaatgaggccgccaagtcgctggatgtgacggtcttggtgaatttt
accagtcttcattcggtccccattatcatcaaccaaattagcaacatcatggctgatctc
cataaccttgacagcatcaacaccatttctcataacttcaagcacacttccatggctggt
gattttgactttggatcatttggtgggacgattttcattggatttacttacgtgcttatt
ccaattggcttggctttggagctgatagaagatcgcgagatccgggctaaaaaccagctg
agagtaaatggattaacttttgggctttactacgggtctttctaccttgttttgggagga
atgatgttgatagtcttggcagtgttgctgggactggtttgggctttccaaatcgctcct
ctcaccttgatgccggctttcttgaccttggctttgttgtatcttatctacacacccgct
gctctcctattttgttcagccatcagttacttgtttgataaggtggagaatggacagttc
cttttcccaattgcttcctacgttggattcattccatacattgctgtctctttattggac
atgtttcaggtggcagatggattggtgggcaagatttgccacgtggtttttgcctttttg
agcccaatttatattccatttggagcggtctactatatcaatcgacaatttgtcttcaac
ctttgcggaattacaaccgattgctcggagatcacctttggcaactacatgggacaatat
gagatctacaccttgttcattgcttgtggcttccacctcattgtttggttcattgtcctc
aaagtggccgatgtggtcaaagacggtggaagcgttcgagaaggattctcatttttgatg
aagaacaacgacaaatacaaaaagatcgaccaagaccgcgagaatgtggatatgatcgag
gacgaagacgtggacgttcgtcgggaacgtgatgaagtcaatgaatactttgctcacaac
ggcgaaagtcgtgttgtggccgttcaaggcctacgcaaagagttccctaccaacgaaggc
aaagctgaaaaaacctcgattagcaaagagtctcacaagaaagtgagtaacaagcttaag
gtggccgtaagaaacatgaccatgggagttcagccaggagaggtgtttggtctcttgggc
cacaatggagccggaaagaccaccaccatgagaatcataaccgctgaagaggcttccact
gcaggcaatgtgaaaattggcaagcataacattctctcgaacgcctctccgggcttcgat
atgttgggatattgtcctcagtttgatgccgtgtggaaaacaatcacaattcgggagcat
ttgcaagtgtatgctgccattcgaggagtggccaagccaaatatcggccgactgaccaat
caattcatggaaggtctccaaattgaagagcattccaacaaatatgccaaggactgctct
ggtggaacgaaacggaagttgagctacgccatggccatgttaggcgatcccaagattgtt
ctgctcgatgaacctagcacaggaatggatccgcaatccaaacgatttgtttgggacacc
attttggccagtttcaaggatgatagaggagccattttgacaacacattccatggaggaa
gctgatgcattgtgtaccagggttggaatcatggtcaaaggagctctcagatgtttggga
tccactcaacacttgaaaaaccgttatggaagtggatacatgctagaggccaaactaaag
aatgaaggtggtccagaggaggccttggatcaacattggtcaactctagaaaaagaaatc
ctcaacgagtttcccggcgctgtcctccaagaaaaattcgctgatagacgaacctattcc
attccacagtcagcattctcatccttggcctcggctttcaaaaccttggaacatctgaaa
tccactcacgacgtcgaggagtacagctttggtcagactactttggagcaagtgttcctg
gaatttgcaaagcaacaagaggctgctgacgaggaggcagattctgacgaaatggaacat
cctacaaataggttggacggcagtcagaggagtgtcagtagaacggggagcatcctccct
gtaaccgagctgtga
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integrated database retrieval system
