Tigriopus californicus (tidepool copepod): 131877795
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Entry
131877795 CDS
T09700
Name
(RefSeq) endoribonuclease Dcr-1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcf03036
]
131877795
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
131877795
microRNA pathway
RISC loading complex
131877795
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dsRBD
Dicer_platform
Ribonucleas_3_3
Dicer_dimer
PAZ
Dicer_PBD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
131877795
NCBI-ProteinID:
XP_059079565
LinkDB
All DBs
Position
3:4718755..4724789
Genome browser
AA seq
1919 aa
AA seq
DB search
MSSSTTSSFYESVAPAMWPWEGVPHDTTTPLEPGVEAVRVGVADDMILLLSHAHMKTFIL
PALVREVGLGRMGVAVFVVRRESQMSLWAEYLRRVSYSTIAEIDVDEPKPGQKWKEGVLL
ATPEALKLALTKDQIGLWALLVIDNAHLLVDNEDIRLITANAQTSHHQPRIVSLCGNPLE
AQGSLTHYQTEIQALQRVYPGRVEAVSEQLSLLRSIIRPKLGLVEYDTPKDTPEVMENLE
KTILARTDDLLAFLGHHRHSLIEIYGEEFADLIEEMPDPTLIPIQLVLDYQAVVKELGLW
AAERAAIIMAIKVDKLKTMEKYERQYLLLSIVYSEMLQLRQICGLALAGMEEDEKLQRCI
KPKVLRLVEILLQYQPNQDDPPRVMGKGAKGNDPRLLHGMVFFKSHFQTKVVYHYLKALA
RSEEKYAFILPQYVLGDGSEECMMEVTPLEQVKKREEDALKKFRLKEANLLLSSDSLELG
VDKVRCNLVVLFDSLPEKLKDYIHCKIKAKYPESLFLILSSCHESEQSLKKLDLYETTEK
DLTSRSLFYQVEAASIGSFGSQNDSLKTSATELKLQKALWCLNRFCAKLPSDTFTRLTPI
SYTTSQDDMFLTGLLLPINSPIREPVYGTLMPNPNLALNSAALKACQMLYKSQELDENLF
PTGKDVLLKQYQNLQSLAPQPGNRPGPQKQRHYYYKTTSPSLTLTSASETSHLYSLDLVL
QCPIPEDQNTRGRKLFSPERAMQSFGFFSSKILPPTCPFPIYTRSGEVIVTLSLVEKDFK
IDENQRDLLDTFHHFTFSKVLRLEKYPMAFDLERAESNILIVPLKKQTSEGMVTKNVDWK
FLDVIKEFCSTKAEPQKYDTEKGEKFEFGANDFTDAVVMPWYRNQDQPQYFYVAEICSHL
SPQSDFPGQGFETFEKYYKSKYHIAISNPDQPLLDVDHTSARLNFLTPRYVNRKGIALPT
SSEETKRNKRDNLEQKQILVPELCSIHPFRASLWRQMVALPCIFYRLNSLLNADSLRAKI
CVDTKLGKAELEPKFRWEPLDFGWTLADVMKSGPLDQTIFTNIKVKKIKERVRKSSINNE
NRADITEIFDDDEEGEDGPGDNLGKLNDVLLSKLIEEDQKLKQKSLEIGTWSNEMAAKNL
REEMAQKGQQSKTKSKGQVQSDDEDSLSDIFDPTEALPDNLTFLSNDIFPSFTSTGGKDW
GTGIEQRHFRVGSPTFFSNPNINIPGLMDDSDGLSCSDTDDEDFGENKNYVTEEDGNVKI
EFRGNNLAEAIEDAAEEKKRRDILDKFRLEEKELVSLEPWIWNEEAEPCTRVSSQTVELT
KVDMSINLGLDKADKEEEDSLVSTENVTPAENPAVLIRLSKAIETKLLQTKVPSVVEEPL
VILKPGLIPWESDRPLGFSFDNQPSLDTHPGPPPSLILQALTMSNANDAINLERLETIGD
SFLKYAVTSALYLAYPDTPEGRLSHLRSKQVSNFYLYRLGRDKGLGECMIATKFEPHDNW
LPPGYYVPKDLEKALIESGIPSSQWNSANLPDVSKLKSDADIYAIIKERTRDLVENSNEG
DPPETKPSSKPEDLRSFVPYNLLTQQSIPDKSIADCVEALIGAYLISGGKKGALNFMSWL
GMDIKINENVGQLLSYRSNLPEAERHLDHFLRGFDQFEKNVGYVFRDKGYLLQAFTHTSY
YPNRFTDCYQRLEFLGDAVLDYLITRHLYEDPQKHSPGALTDLRSALVNNTIFATLAVKH
NFHKFLLHLSPGLQTICHRFVKIQEENEFQIADDFYLGGDGLSAGSGFWREDGSLGEVED
VEVPKALGDVFESIAGAIYLDSGFSLDTVWKVYFRMMGDEIKRFSTHIPKSPIRELLELE
PETAKFGKPEKLSDGRRVRVTVDVFGKGVFKGIGRNYRIAKCTAAKCALRALKKTGKNV
NT seq
5760 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcgaccacctcttcattttacgagagtgtggctccagctatgtggccttgg
gagggcgtgcctcatgacacgaccacgcccctggaaccgggagtggaggccgttcgagtg
ggtgttgccgatgatatgatcctgctcttgagtcacgctcacatgaagaccttcattttg
ccggccttagtcagagaagtgggattgggaagaatgggcgtggctgtgtttgtagtcagg
agagaatctcaaatgagcttgtgggcggagtaccttcgtcgggtcagttactcgaccatt
gccgagattgacgtggacgaacccaaaccggggcaaaaatggaaggagggggtgctctta
gccacacccgaagccttgaaattggccttgaccaaggatcaaataggtttatgggccttg
ttagtgattgacaatgctcatctactagtggacaatgaagatattcgactcatcacagcc
aacgcccagacttcacatcatcaacctcgaattgtcagtttgtgtgggaatcctttggaa
gcccaagggtctttgacccattatcagactgaaattcaagccctccagcgggtctatccg
ggtcgtgtagaagcagtgagtgagcagctctcattattacgttcaatcatccgacccaaa
ctcggcttggtggaatatgatacgcccaaggacacgccggaagtcatggagaatctcgaa
aaaacgatcttagcccgaactgacgaccttttggcttttctgggacatcatcgccactcc
ctgatcgaaatctatggagaagagtttgccgatctcattgaggagatgcctgatccaacc
ctgattccaattcaacttgttcttgattaccaagcggtggtcaaagaactgggtttatgg
gcagctgagagggcagccattatcatggccatcaaggtggataagctcaagaccatggaa
aaatatgaacggcaatatcttctccttagcatagtctacagtgagatgcttcagttacga
cagatttgtggtctagcattggcgggaatggaggaggacgagaaactgcagcgatgcatc
aaacccaaagtgctaaggttggtggaaatcttactccaataccagcctaaccaagatgat
cctccacgcgtcatgggcaaaggtgccaaaggaaacgatccccggcttctacacggaatg
gtgtttttcaagagtcactttcaaaccaaggtggtctaccactatttaaaagctctggcc
agatccgaagaaaaatatgcattcattctgcctcagtatgtgctaggagacgggtctgaa
gaatgtatgatggaagtcacgcccttagagcaagtgaagaaacgcgaagaagatgctctc
aagaagtttaggttgaaagaagccaaccttttactctcgagtgattcattggaactgggc
gttgataaagtgagatgtaacttggtggtcttgttcgactcgctgcctgagaaactcaaa
gattatattcattgtaaaatcaaggccaaatatcccgagtccttgtttttaatcttgtcc
tcttgtcacgaatccgagcaatcgctcaaaaaattggatttgtacgaaaccactgaaaaa
gatctcacatctcgctctttgttctatcaagttgaggcagcatccattggctcatttgga
tcccaaaacgacagtttgaaaacttctgccactgagctcaaattgcaaaaggccctatgg
tgcttgaaccgcttttgcgcaaagttacccagtgacacattcacaagactcactccaatc
agttacaccacctcacaagacgatatgtttctcacaggactccttctgccgataaacagt
cccattcgagagccagtctatggcacactgatgcccaatccaaatctagctttgaattct
gcagccttgaaggcgtgccaaatgctatataagtctcaagagctggacgagaatctcttc
cccacaggaaaggatgttcttctgaagcaataccaaaacctgcagagtttggctccccaa
ccgggcaatcgtccggggcctcaaaagcaacgccactactattacaagaccacctcacca
tctttgactttgacaagtgcctccgaaactagccatttgtactcgctagatctcgttctc
caatgtcccattccagaagatcagaacactcgaggcaggaaactgttctctcctgagcga
gccatgcaaagctttggcttcttcagcagcaagatccttcctccaacctgtccatttcca
atctacactagatctggagaggtcattgtcactctctctttggtggagaaggacttcaaa
attgatgagaatcaaagagatcttttggatacgtttcatcattttacgttttcgaaagtg
ctccgattggaaaagtatccgatggcctttgatttggaaagagcagagtccaatattctc
atcgttccgctcaaaaagcaaacctcagaggggatggttaccaaaaatgtggattggaag
tttcttgacgtcatcaaagagttctgttccaccaaggctgagcctcaaaagtacgacacc
gagaagggggaaaagttcgagtttggtgccaacgacttcactgatgctgttgtcatgcct
tggtatcgcaatcaagatcaaccgcaatacttctacgtggccgaaatatgttcgcattta
agccctcagtctgactttcctggacagggttttgagacctttgaaaagtactacaaaagc
aagtatcacattgccattagcaatcccgatcagccgcttttagatgtggatcacacctca
gctagactgaactttctgactcccagatacgtgaatcgcaaaggtattgccttaccgacg
agcagcgaagaaacgaaacgaaacaagagggataatttggaacaaaaacagattcttgtt
ccagagctttgttccattcatccattccgagcatccttgtggagacagatggttgccttg
ccctgcattttttaccgtttgaactcgcttctcaatgccgattctctaagagcaaaaatc
tgcgtggacaccaaacttggcaaggctgaattggaaccaaagttccgatgggagcctttg
gactttggatggacattggcagatgtgatgaagagtggaccccttgatcaaacgatattc
accaatattaaggtcaaaaaaattaaggagagggttagaaaatcctcaatcaataacgaa
aacagagccgacataaccgaaatatttgacgacgatgaggagggcgaggacggccctggg
gataatctgggcaagctcaatgatgttttactttccaaattaatcgaagaggatcaaaaa
ctaaaacaaaagtcgctcgagattggaacatggtccaacgaaatggcagccaagaatctg
agagaagagatggctcaaaagggccagcagtccaaaaccaagagcaaaggacaggttcaa
agtgatgatgaagacagcttaagtgacatcttcgacccaaccgaagctcttccagacaat
ctgactttcttaagcaatgacatttttccgagtttcacatccactggtggcaaagattgg
gggacggggatcgagcaacggcattttcgcgtgggctcgccgacattcttctcaaacccc
aacatcaacatcccgggcctaatggatgattcggatgggctttcttgctctgacacggat
gatgaagactttggggagaataaaaactatgtcaccgaagaagatgggaatgtcaaaatc
gagttccgtggaaacaatttggctgaagccattgaggatgcagctgaagaaaagaaacga
agggacattctggacaagttcagattggaagagaaagaattagtgtccttggaaccatgg
atatggaacgaagaagctgagccgtgtacccgagtctcaagtcagaccgtggagctcacc
aaagtggatatgtccattaatttgggattagataaggcggacaaagaggaagaagactct
ctcgtaagtacagagaacgttactccagccgaaaatcctgcagtgctcatcaggctctcg
aaagcgatcgaaacaaaactcctgcaaaccaaggtgcccagtgttgtagaggaaccttta
gtgatcttgaaacctggactgattccatgggagagtgatagaccccttggtttcagcttt
gacaatcaaccaagcctagacacgcatcctggtccacccccaagtctgatattgcaagcc
ttgaccatgtccaatgccaatgatgccatcaatctggaacggctggaaaccatcggagat
tctttcttgaagtacgccgtgacctcagctctttatttggcttaccctgacacacctgag
ggccgattgagccatttgaggtccaaacaagtgagcaacttctacttatacagacttggt
cgtgataaaggcttaggtgagtgcatgattgccaccaaattcgagcctcatgataattgg
ctgcccccgggatactacgtacccaaggacttggagaaagcacttatcgagtcgggtata
ccaagcagccagtggaatagtgccaatctcccagatgtgtccaagctcaaatctgatgca
gacatctatgccattatcaaagaacgaactcgagatctggtggaaaatagcaacgagggt
gaccctccagaaacgaagccctcaagcaaacccgaagacttgagatcgtttgttccttac
aacctcctcacgcaacagagcattccagacaagagtattgcggattgcgttgaagcttta
ataggagcttatctaatatctggtggcaaaaaaggagcattgaacttcatgtcttggctt
ggcatggacatcaaaatcaatgaaaacgttggtcaacttctttcttaccgatcaaacctt
cctgaggctgaacgccatttggatcacttcctccgagggttcgatcaatttgagaagaat
gttggttacgtattcagagacaaaggttacctccttcaggccttcactcacacgtcttac
tacccaaaccgattcacggactgctatcaacgtcttgagttcctgggagatgccgttctc
gattatttgattacccgacatctttatgaagaccctcagaagcattcaccaggggcatta
acagatcttcgctcagctttggtcaacaataccatttttgccaccttggctgtgaaacac
aatttccataagttcctattgcatctctcaccgggacttcagaccatctgccatcgattt
gtcaaaattcaagaggaaaatgagtttcaaatcgcagatgacttttacctcggaggtgat
ggtttatctgcaggatccggtttctggcgagaagacggatccttgggtgaggttgaagac
gtagaagtacccaaagctctcggtgatgttttcgagtccattgctggagccatctattta
gacagtggatttagcctcgacacggtgtggaaagtgtattttcgcatgatgggcgacgaa
atcaagcgattcagtacacacatcccgaaatcgccaattcgagaactactcgaacttgaa
ccagaaaccgcaaaattcggaaaaccggagaagttatccgatggtcgtcgagtgcgcgtc
accgtggatgtttttggaaagggcgttttcaagggcattggacgaaattatagaattgcc
aaatgcacggccgctaaatgtgctttacgggcactgaagaaaactggcaagaatgtgtga
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