Tigriopus californicus (tidepool copepod): 131877967
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Entry
131877967 CDS
T09700
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131877967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131877967
Enzymes [BR:
tcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131877967
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
131877967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
131877967
NCBI-ProteinID:
XP_059079806
LinkDB
All DBs
Position
3:12719110..12732731
Genome browser
AA seq
1757 aa
AA seq
DB search
MAHSHFRRLRDLGRSNPDALHDFPQSVTFGLYDQDEIRSLSACAITSPVSFNALAHPVPG
GLYDLRMGPFTDRADQICATCLLTCEHCPGHIGHIELPLPVCNPLFYSTILQTLKLSCVA
CHKFSVADYVKELFLVRQKLLAQGLIIAAQKASEVGVIHEEDFSQVDDKPRRKAKVDRAA
TEAVVHKLRDFFDDELVQSKAMITLQDKSTRSVEDLQKQYRKAFLKSQAGGRKRCPHCSA
MTFRIVHYKSRFIFEGFKRVGEEEEGVPAAKVKKGSGEKEKTELNAEELKRHFRELWIHD
SEVLSYLYPMLRTSTAKYPTDVFFVDVLAVPPPKSRPCQFMGGSLNIHPQSTGLQYVVES
VTVMKQVLQLLRGQDLESLSAETKDMIKSIRGVSLELKLDSVWKELQGCVDHVLDKEMKS
GSMQKVGWGFKQLIERKEGIFRMHMMGKRVNYAARTVITPDPNICIDEIGLPEVFAKQLT
YKVPVTHWNVEELRDMVVNGPDVHPGAVFVENENGYRKVIDPTNKVQREALAKTLLTPGS
HGEEATKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADF
DGDEMNAHFPQNEVARAEAYEIANVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFN
RADYMQHVFSALVDHPGKIKTLPPTIIKPEQLWSGKQIVSTIILNLVPKDKAPPTLLSSA
KIKTNEWSKVKARPWTAGGPLPDNKTDDNTTMSESEVIFRQGEFLSGILDKNQYGTTQYS
LVHVFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTSQANQKREAIMAATKK
MGNQMAANGVNLKFEDPSEIDEEELRAKLEQYHRETRVIPKRRLDIDRGFKDKLAPATND
INGACLPRGLIKRFPDNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSL
PSFKAYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKL
LEGLVVNYDMTVRDSDGSVVQFQYGEDSMDVCKAQYLRSDQLDFLHNNKASILDPKAIDL
AQKYTDVDDLDHAKRKMIKWKIKHGAKDYRDSGFLRFCRKRGGEHHELAQIQSKFGRSKL
DDFLLDEWRSMSDEERRPYHKKAPICPDPVVHGYRPDSNFGSVTEALDDMIETYLSKKDS
TRFDTVQFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLG
IPRLREILMVASANIKTPSMTIPFHSEVSDKQRDALRISLNRVTLKDVLENVHVTESIKL
QGKRQRIITLRFEFLPRKAYKDRFLTTPNKILAYFERKFVFKVFMPVMTAIIKDKKITVE
SGAEAPGSKDKKNDDVERNVDALEREGVGEGHASSDEEDLPDDADATDARKKSRQMDGDH
EEGLSEDEELMVKSLANELDDILEDEDPDGDLASKPNSNRSLPTFPTTMDAVDDGFEDMA
EESDESMIKTEDLEELNMGKDEAIKRRNYILQQSKPTGLASVVNYSYDTEKELWCQLTLA
FDIQRKSMDMSNVVKKAAEKAIIHEVKHISRAFLVKNDKSEPCLTTEGVNIEAMFERDHL
LDLKRLACNNIHDMARYYGIESANRTIVSEIVNVFKAYGIVVNPRHLTLIADYMTFDGSY
KPFNRIGIENNPSPLQQMTFETAIGFLRHATLSGKTDTLDSPSSCIVVGKPCFGGTSSFK
LVQNLMAGVKERSFAAT
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggcccattcccatttccgtcgcttgcgcgatttgggtcgtagtaacccggatgcgttg
cacgactttccgcagagcgtgacttttggcttgtacgatcaggacgagatccggtctttg
agcgcctgcgccatcacctcacccgtcagtttcaacgccctggctcatcccgtccccggt
ggtttgtatgatttgcggatgggcccatttacggatcgagctgatcagatctgcgccacg
tgtcttctgacttgcgaacattgtccgggtcatattgggcacattgagttgcccttgccc
gtgtgcaaccccctattctactcaaccatcctccagaccctcaagttatcttgcgtcgcc
tgtcacaagttcagtgtagccgactatgtcaaggagttgttcctggtccgacaaaagctc
ttggcgcaaggactcatcatcgcggcgcaaaaagcctccgaagtgggtgtgatccacgag
gaggacttctcccaagtggatgacaaacctcgacgtaaagccaaggtcgatcgtgccgcc
accgaagccgtagtccataaacttcgtgactttttcgacgacgaactcgtccaatccaaa
gccatgatcacgcttcaagataagagcacccggagcgttgaggacttgcagaagcaatat
cgcaaggcattcctcaaatctcaagccggaggtcgaaagcgatgcccgcattgctcggcc
atgaccttcaggatcgttcattacaaatctcggttcatctttgaaggctttaaaagggtt
ggagaagaagaagagggggtccctgctgccaaggtcaagaaaggctcgggtgagaaggaa
aagaccgagttgaatgctgaggagctcaagaggcatttccgtgagctctggattcatgat
tccgaagtgttgtcctatctgtatcccatgttgcgcaccagcactgccaaatatcctacg
gacgtgtttttcgtggacgtgttggcggtgcctccccccaaatcccggccctgtcaattc
atgggcggctcgctcaatattcacccgcagagtacgggtttgcagtatgtggtggaatcc
gtgacggtcatgaagcaggtgctgcaattgttacggggacaggacttggaatccctgagt
gcggagaccaaggacatgatcaaatcaatccgaggggtgtccttggaactgaaattggac
agtgtctggaaagagctgcagggttgcgtggatcacgttttggacaaggagatgaagtcc
ggctccatgcaaaaagtgggttggggcttcaagcaattgatcgaacggaaagagggcatc
ttccgcatgcacatgatgggcaagcgggtcaattatgcggctcgaaccgtcatcacacct
gatcccaatatctgcatcgacgagatcggattgccggaggtgtttgccaagcaactcacc
tacaaagtgcccgtcacccattggaatgtggaggagctccgggacatggtggtcaatgga
ccggatgtccaccccggagccgtgtttgtggagaacgagaatggctatcggaaggtcatc
gatcccaccaataaggttcaacgtgaggccttggccaagacgcttctgacgcccggaagt
cacggtgaagaggccaccaaatatgtctatcggcatctcatcaacggggatgccatgctg
ctcaatcgacaacctacgcttcacaaacccagtatcatgtcacaccgtgctcgagtcttg
aaaggcgaaaaagtgatgcgtcttcactacgccatttgcaaatcctacaacgccgatttc
gacggtgacgagatgaatgctcatttcccgcaaaatgaagtggctcgggccgaggcctat
gagatcgccaatgtgtgcaagcagtacctcgtacccaaggatggcacgcctctacaaggt
ctcatccaggatcacatcatcgctggcgtcaagatgaccatacgtggacgattcttcaat
cgtgccgactacatgcaacacgtgttcagcgctttggtggatcatcccgggaagatcaaa
actctacccccgaccatcatcaaacctgaacagttgtggtctggcaagcagatcgtttcc
acgatcattttgaatctggtgcccaaagacaaggctcctcctacattgttgtctagtgcc
aaaatcaagaccaatgagtggtccaaggtcaaggccagaccttggaccgcgggtgggccc
ttgcccgacaataagaccgatgacaacacaaccatgtcggaatcagaggtcatctttcga
caaggagaatttctttcgggaatcttggacaagaaccagtatggaacaacccaatacagt
ttggtccacgtgttcttcgagttgtacggaggaacctactctggcaagttgctctcggcc
ttctccaagatcttcaccaatttcctccataccgaaggcttcaccttgggtgtacgggat
atcctcgtcacgagccaagccaatcagaagcgtgaagccatcatggccgccaccaaaaag
atgggcaatcaaatggcggccaatggcgtcaacctcaagttcgaagacccgtcagagatc
gacgaggaggagctcagagctaaactagagcaataccaccgtgagacccgagtcattccc
aaacgccgacttgatattgaccgtggcttcaaggacaaactcgctcccgcaaccaatgac
atcaatggcgcctgcctcccccggggtctgatcaagaggtttccggacaataacctccaa
ttgatggtacaagctggagccaaggggtccaccgtgaacaccatgcagatctcgtgtctc
ttgggacagatcgagttggagggcaaacgaccgcccatcatgatctcgggtaaatcgttg
cccagtttcaaggcctacgatacccaaccccgtgcgggtggattcatcgacgggcgattc
atgagcggaatccgacctcaagagttcttcttccattgtatggctggacgagaaggtctc
attgatactgctgtgaagaccagtcggtccggatacctccaaagatgtctcgtcaaacta
ctcgaaggtttggttgtgaactacgatatgacggtgagggacagcgacggatccgtggtc
caattccaatacggagaggactccatggacgtgtgcaaggctcagtacttgagatcggat
caactggacttcctccacaacaacaaggcctccatcctcgatcccaaggccatcgatctg
gcccagaaatacaccgatgtggacgatctggaccatgccaagcgaaagatgatcaaatgg
aagatcaaacacggtgccaaagactatcgggactccggattcctccgcttttgccgcaaa
cgaggaggtgaacaccacgagctcgcccaaatccagtcgaagttcggccgatcgaagctc
gacgacttcctcttggacgaatggcggtccatgagtgacgaagagcgacgaccctatcac
aaaaaggcccccatctgtccggacccggtggtccacggataccgacccgattccaatttc
ggctccgtcaccgaagccttggatgacatgatcgagacctacttgagtaagaaggactcg
acgcgtttcgacacggtccaattccgggatatgatgtacttgaaagccatgcacgctatg
gtggaaccgggcgagcccgtgggcgtgctcgccgctcagtccgtgggcgagccgtccact
cagatgaccctgaatactttccatttcgctggacgaggagagatgaacgtcactttggga
atcccgagattgagagaaattctcatggttgcctctgccaatatcaaaactccgagcatg
accatcccctttcattcggaggtatcagacaagcaacgcgatgctctccgtatcagtctg
aaccgtgtcacgctcaaggacgtcttggagaacgttcatgtcacggaaagcatcaaactc
cagggcaagcgacaacgcattatcaccctccggttcgagttcctacctcgtaaagcctac
aaggaccgattcttgaccactcccaacaagatcctggcctactttgagcggaaattcgtg
ttcaaggtgttcatgcccgtgatgacggccattatcaaggacaagaagatcacggtcgag
tctggcgccgaagcgcccggttccaaggacaagaagaatgatgatgtcgagcggaatgtg
gatgccttggagagagaaggtgtgggcgaaggacacgcctcatcggatgaggaggacctg
cccgatgatgcagatgccaccgatgcccggaagaaatctcgccaaatggacggtgaccat
gaagagggcttgagtgaggacgaggagctcatggtcaagtccctggccaatgagttggat
gacatcctcgaggatgaggatccggatggtgacttggcctccaaaccgaatagcaatagg
tctttgcccacctttccgaccacaatggatgctgtggatgatgggtttgaagacatggcg
gaagaatcggatgagtccatgattaaaaccgaggacttggaggagctaaatatgggcaag
gatgaggccattaagcgacgcaactatattctccaacaatccaaacccactggcttggca
tcagtggtgaattattcatacgatacggaaaaggagttatggtgtcagttaaccttagcc
tttgatatccaacgcaagtccatggacatgtccaacgtagtaaagaaggccgccgagaag
gccatcattcacgaggtcaagcacatttccagggcgttcctggtcaagaacgacaagagt
gaaccctgtttgaccacggagggcgtgaacatcgaggccatgtttgaacgagatcatttg
ctggacctcaaacgattggcttgcaacaacatccatgacatggccaggtattacgggatt
gaatcggccaatcgcaccatcgtctcagagatcgtgaacgtgttcaaagcttacgggatt
gtggtcaacccgcgtcatctgaccttgatcgcggattacatgacctttgatgggtcctac
aagccgtttaaccgcatcggaatcgaaaataacccgtcgcccttgcaacagatgaccttc
gaaacggccatcgggtttctgagacacgccactttgagcggaaagacggacactttggat
tcgcccagttcgtgcattgtcgtgggcaagccttgttttgggggaaccagctcattcaaa
ttggtgcaaaacctcatggccggggtcaaagagcggtcgtttgcagccacttag
DBGET
integrated database retrieval system
