Tigriopus californicus (tidepool copepod): 131878158
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Entry
131878158 CDS
T09700
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase-like
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcf03016
]
131878158
Enzymes [BR:
tcf01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
131878158
Transfer RNA biogenesis [BR:
tcf03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
131878158
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
DUF1450
Motif
Other DBs
NCBI-GeneID:
131878158
NCBI-ProteinID:
XP_059080047
LinkDB
All DBs
Position
1:complement(8145673..8147857)
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AA seq
560 aa
AA seq
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MLNTALEDAITDIEETVTHRAAPQRSYGPASAGITTTTCLAPNEPAIQLRARPTQRVTST
SPDLGHDPMNGGCLGQPKSSFLAEQFRIHVRTWGCSHNNSDSEYMMGLLAQEGYVLTDQS
DEADLCLFNSCTVKSPAEDHCRNAVERALSAGQKVVVAGCVPQGQRDGAFLQNVSLLGVQ
QLKRVGTVVEETLKGHRVTYLQGRSQYSEGYDLFMPKVRKNAQVEILAINSGCLNHCTYC
KTKHARGQLRSFPPNLLVERARQTWTEGVTEIWLTSEDTGAYGRDLGTNIAALLRRLVRV
IPSGCRLRLGMTNPPYILDQLPEIAEILRHPKVYSFLHLPIQAASDGVLRDMKRDYTQQD
FRECVDFLRANVPHIHLATDIICGFPTETPEDFEETLDLCDFYRFPSLFINQFFPRPGTL
AAKMQCVATKQEVKKRTKALHELFYSYSPLDDRLGQIHSVLITDVSHDKRFWVAHNLWYD
QVLINKEQTNVEPGQLVWIRITNVTKFSVHGEPLTGRGVLAMLLLKKSSLNPLSIMAIVF
TWLIVMLNFLLSLGVQLYLN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaccgccttggaggatgccattaccgatatcgaagaaaccgtgacccaccga
gcggcgccccagcgaagttacgggcccgcttccgccgggatcacgaccaccacctgtctc
gcgcccaatgaaccggccattcaacttcgggcccgccccactcagcgggtgacttcgact
agtccagatttggggcatgatcccatgaatggggggtgcctgggccagcccaagtccagt
ttcttggccgagcagtttcgaatccacgttcgaacctggggatgttctcacaataattcc
gattcggagtacatgatgggtctgttggctcaggaaggctacgtattaacggatcaatcc
gacgaagcggatctatgtctctttaactcgtgtacagttaagagtccggccgaagaccat
tgtcggaacgcggtcgagcgagccttgagcgcgggacaaaaagtggtggtagccggttgt
gtgccccaaggacagagggatggggcttttttgcagaatgtctcgctgttaggggttcaa
cagctcaagcgagtgggtacggtggttgaggagacgctcaaaggccaccgtgtcacttac
ctgcaaggccgaagccaatattcagagggctatgaccttttcatgcccaaggtgcgcaag
aacgcccaggtcgagatcttggccatcaactcgggctgtttgaaccattgtacctattgc
aagactaagcacgcccgtggtcagttacgcagcttcccacccaatctattagtggaaagg
gcccgccagacttggaccgaaggcgtgaccgaaatttggctcacctcggaagatacgggg
gcctatggtcgggacctgggcaccaatattgcggccttgctccgccgtttggtaagggtt
atcccttccggttgccgtttgcggttgggaatgacaaatcctccgtacattttggatcaa
ttgccggagatagctgagattctacgtcaccccaaagtgtactcattcttgcacctaccg
atacaagcggcgagtgatggggttttgcgggatatgaaacgcgattacacacagcaagat
ttccgagaatgtgtcgattttttgagagctaacgttcctcacatccatcttgccacagac
atcatctgtggatttcctacggaaactcccgaggattttgaggaaacattggacttgtgc
gatttctaccgttttccttctctattcattaaccaatttttcccccgtccgggcaccttg
gctgccaaaatgcaatgcgtggccaccaagcaagaagtgaagaagcgtacaaaagctctt
catgagcttttctattcctactcgcctttggacgatcgtcttggacagattcattcggtg
ctcataaccgatgtctcgcatgacaagcggttttgggtggcacacaacctttggtatgat
caggtattaataaacaaagagcagacaaatgtggagccgggtcagttagtctggattcgt
atcaccaatgttacaaagttctcagtgcacggtgaacctttaactggtcgtggcgtctta
gcaatgctattgctcaaaaaatcttcgttaaatcctctctccattatggcaattgtcttc
acttggcttattgtcatgctgaactttttgttgtcactgggagttcaactttacttgaat
taa
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