Tigriopus californicus (tidepool copepod): 131878571
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Entry
131878571 CDS
T09700
Name
(RefSeq) neurobeachin-like isoform X1
KO
K24183
neurobeachin
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131878571
Membrane trafficking [BR:
tcf04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
131878571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
Laminin_G_3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
NICE-3
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
131878571
NCBI-ProteinID:
XP_059080570
LinkDB
All DBs
Position
3:3685517..3751643
Genome browser
AA seq
3200 aa
AA seq
DB search
MSDLEPDSSAPATILPAEASNARENELTSSPGDRPVMAQRADPPDHSALNEAAEVDQDDA
SVTEEPECDRPTNLVAVVPATSPVEPPTPASIEEVVRAEAKVPVAGGSDPTKMEAQAAPI
TPSSEIPHQPDAESKVVALAESTSTVAEIPISEETRVTDEAPAKAQEKVVLATNPTAEVT
EPVEETSDEIESTPVSAESVQNASPTQTDEPGVSDDPKVLVETTKDSPVADDNSVAVPET
VVASEPSESAVTSTDSPPEISGTVKASEETKTSPESRVLASEAAEQHEPPKESPQAQGSE
PKTDVPSVGCPSTDPMAVSEKPQTQETPMAVIPIEEKSPEVLVKSLLTQAKTSDRDKFKT
MEKLIRDKRITNKEVVNGVLFLLVGGEFDLELNFVIVEPNNIHYTLELLDTCDQRLQAEL
WSVFTATLRKSVRNLQACTEAGLMEHLLHRLSKAPPLVVDLLVDLMGILASYSITVKELK
MLFSKMKAVEGKWPSHSKKLMNVLKQMPNRSGPDVFFSFPGVRGSAIVLPPMSKWPYENG
FTFTTWFRLDPLNAVNIEREKPYLYCFKTAKGVGYSAHFVGNCLVLTSMKVKGKGYQHCV
KYEFQPRKWFMLAIVYIYNRWTKSEIKCFVNGQLASSTEMAWLVNTNDPFDKCYIGATPD
VDEERVFRGQMSAIYLFAEALSPHQVCAMHRLGPGYKNQFRFETEGGQLSENHRKVLYEG
RLSTSIVFLYNPVATDGQLCLQCTPKGNTNHFVHSPHALMMEDVKAVVTHSVHSTLNSIG
GVQVLFPLFAQLDLPSETLDHKHGSVQINGSGKDQSLCSTLMSFICELVESSPSIQQQVI
SGRGFLVISHLLSKSSRDHLTLELLQTFLKLTKYLVTCPSNNTDLLLKQLLDHCLFNPAL
WIHTPANVQTKLYSYLATDFLSDTQIYSNVRRVSTVLQTMHTLKYYYWIINPHELSGINP
KGTDGPRPSREEIKSIRSYMLLFVKQLIMIGNGVKDDELQSILNYVTTVNEDDNLHDILQ
MLMSLMCDHPATLVPAFDTKGGVKAVFKMLGSKSQTIRLQALKLLGFFLSRSTHKRKYDV
MNPNNLYTLLVEKLLQREETLTVATYNVLYEILTENVGQNLIYEKHPEPEPHFRLENPMV
LKVVASLIRQSKPNQKLEEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLISMAYIHP
KNAEETKISDMVFALFRMLLHHAVKFEFGGWRVWVDTLAIVHSKVSFEEFKLQFNNVYDK
YDKRRTDQITDPKQRAKKPVSTITGLAQDRDDVDDEDVEDEDEERSREPGNEEEAFEELS
LEEEEEEDPAAKTKSHEEVDAFPTRKRYLGPHPGKVSEEASGTQDPDGPASNKAKDLKKP
PPTFSPGPSRPPFRIPEFRWSYIHQRLLSDVLFSLETDIQVWRSHSTKSVIDFVNSAENG
IFVVNTVHLISQLADNLIIACGGLLPLLASATSPNNELDVLEPTQGMPIEVAITFLQRLV
MMADVLIFASSLNFADLEAEKNMSSGGILRQCLRLVCTCAVRNCLECKEKASGGGGGGGR
VIVPTPLGLTNEGANQPPAAGKPGQPARQFNKEALSKVALDSLKVQASGVKDLEKLLQDM
DVNRLRAVIYRDVEETKQAQFLSLAVVYFISVLMVSKYRDILEPPIPGGSNNGSTHSRTQ
SGPRGKCPPRPQPFHGSDCSCYHQNNGADSLSPPSPVSNLDDYYVCECSSCRNLGNSVDI
CCQCCACSEGHPLKSPNNFGTPGRYQVRSVALTGESDDTLEVCLNEDYDEDDLALAHSVA
EGTGTCADCRSSTSPPERGPAFTGWSGQPRPLNSIRSAIQTRHFHPKMGNNGGVHHHHHS
HTVDTVTSMNRGKGCDKPNFVDERRMSHESSKILKDDESSMMEEVTESELQMVSSSTTNS
ASGPNEKAATTSPGQASSVSSNSSADVTDGGRHSKRSSSYSSPTSNNKDKKEFNGTSAAE
DALQTFQEVRLEAASEPSGSEPTNAERGERMNEEISVLSPMPRNLNIAPTHESDSEANKN
RPDDLNIKPFAPSKPLPVPTPSREATLTQKLEQALGSVCPLLREIMVDFAPFLSKTLVGS
HGQDLLMEGKAIMTFKNSSSVVELVMLLCSQEWQNSLQKHAGLAFIELINEGRLLSHAMK
DHIVRVANEADFILNRMRADDVLKHADFESACGNTLSDRTEEEKMCDHLITAARRRDGVL
AGRLVDKVVDVLSTRHGAWSKREDGPRDFWKLDVWEDDARRRRRLIRNPLGSTHPEATLK
AAIEHGAAEDAIEAAQAEFHAHLAAARSQNNQQSNNHDLVEDSELVGEDRELDSDSQGPI
NISTPAILVSPGISLWGTISITSSEVYFEVDEDHDEFKKIDSQVLQYSDHLHGKWYFSEI
RAIFSRRYLLQNTAIEIFLASRTSIMFAFQDQATVKKVVKVLPRVGVGIKYGIPQNRRAS
LMSARQLFQASNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYEDTEI
DLSSPNNYRDLSKPVGALNQSRREYFEERYNTWDNDQIPPFHYGTHFSTSAFVLNYLLRL
EPFTTMVLALQNGKFDYPNRLFSSVKRAWDNCQRDTSDVKELIPEFFCLPEMFVNMNGYK
LGRLEEGEGVDDVELPPWAATPHEFVRINRQALESEFVSCQIHQWIDLIFGYKQRGPEAI
RATNVFYYLTYEGSVDLKAMADPVMREAVENQIKHFGQTPSQLLMEPHPPRSSAMHLSPM
MFTPLPDDVCMIMKFLSNSPICHITANTFPQLPLPSVVTLTANHHFAINRWNSSYAGIEG
QLRSKKLASSSASSATSSQSQQGGPGGGGSHSQLQSGASTAPMKPPSTQQHHPTSTSSTS
QAPSQAPSYAESQSPSPGAASLPLAMDPILAVVTNATGHQVRRHLGDNFSQRVVMRHSCF
VVTVDSRFILACGFWDNSFRVFSAESAKIVQIVFGHYGVVTCLARSECNITSDCYIASGS
QDCTVLLWHWNARSQSIVGEGDHPTPRAVLTGHDQAVSSVVISAELGLVISGSTDGPILV
HTTFGDLLRSLDSPEGLTAPLNIALSREGFVAAHFPGGHVVSYTANGYRLRHEVHNDKIQ
CILLSRDGEYLITGGDRGIVEVWRTFNLALLYAYPACDSSVRSLALTHDQKFLLGGLSNG
AVVVFHIDFNRWHHEFQQRY
NT seq
9603 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctagagccggattcgtcggctccggccacgattctgccggccgaggcctcg
aatgctcgagaaaatgagctcacgagctctccgggggatcggccagtaatggctcagcgg
gccgatccgcccgatcatagcgccttgaacgaagcggccgaagtggatcaagatgatgcc
agtgtaacggaagagcctgaatgtgatcggcccactaatctggtggccgttgttccggcc
acgtcaccggttgagcccccgactccggcctcgattgaagaggtagttcgagctgaagcc
aaagtcccagtggcaggagggtcggacccgacaaaaatggaggcccaagcagccccgata
accccttcgtctgagattccgcaccaacccgacgctgagtctaaagtcgtggccctggca
gaatccacatcaactgtggccgagattccgatttccgaagagacccgggtgacagatgaa
gcaccggccaaagcgcaagaaaaagttgttctggccacaaatccgacagccgaggtgacc
gaaccagtggaagaaacgtccgatgagattgaatctactcctgttagtgctgagtcggtt
cagaatgcttctccgactcagaccgatgaaccgggtgtctcagacgatcccaaagtgttg
gtcgagacaaccaaagacagcccagtggccgacgataacagtgtagcggttccggaaacc
gtagttgcttcagagccctctgaaagtgctgttacctccacggactccccccccgagatc
tcgggtacggtgaaagcttctgaagagacaaaaacatcgcccgaatctcgggttttggcc
tcggaagcggccgagcaacacgaaccacccaaggagtccccgcaggctcaaggaagtgag
cccaaaactgatgtgccgagtgttggttgtccctccaccgatccgatggcagtgagtgag
aagcctcaaacccaggagacgcccatggcagtgattccgattgaggagaagtcgcctgaa
gtgctggtcaaatcgctcttgacccaagccaaaactagtgatcgtgacaagttcaagacc
atggagaagctcatccgagacaagcgaatcaccaacaaagaagtggtgaacggcgtactt
ttcctgctggttggtggagagttcgatctggagctcaattttgtgattgtggaacccaac
aacatccattacaccctagaacttctcgacacctgtgatcaacgacttcaggctgaactg
tggtcggtgttcacggctactttacggaaatccgtccgaaatctgcaagcttgcactgaa
gccggactaatggaacatttgcttcatcgcttgtccaaggcccctccgttggtggttgat
ttgctcgtggatctcatggggattttggccagctacagcatcaccgtcaaggagctcaaa
atgctcttcagcaaaatgaaagccgtcgaagggaaatggccaagccattcgaagaagctc
atgaatgttctgaagcagatgcccaatcgaagtggacccgatgtgttcttcagctttcct
ggggttcgcggatcggccatagtcctgcctccgatgtcgaaatggccttatgagaatgga
ttcacgttcaccacgtggttccgcttggatccattaaatgccgtcaatatcgagcgtgaa
aagccttacctctattgctttaaaaccgccaaaggagttggctattcggcacattttgtg
ggcaattgcctcgtcttgacctcgatgaaagtcaagggtaaaggctatcagcattgtgtc
aaatacgagttccaacctcggaaatggttcatgctggccattgtctacatctacaaccga
tggaccaagtctgagatcaagtgctttgtcaatggacaacttgcttcgtcaacagaaatg
gcttggctggtcaacaccaacgacccttttgacaagtgctacatcggagctactccagat
gtggacgaagaacgtgtctttcgtggtcaaatgtcggctatctaccttttcgccgaggct
cttagccctcaccaagtgtgtgccatgcatcgtctaggacccggatataagaaccaattt
cgattcgaaactgaaggaggccaattgagtgaaaatcatcgaaaagtcctttacgaaggc
cgattgtcgacgtctattgtgttcctgtacaacccagtggctactgatgggcaactgtgt
ctccaatgcacacccaaaggaaacaccaatcactttgtgcattccccgcatgctcttatg
atggaggatgtaaaggctgtggtcacgcattcagtgcattccactttgaattccatcggt
ggagtccaagtcttgttcccgttatttgctcagttggaccttccctctgagacattggat
cacaaacacggtagcgtccaaatcaatgggtctgggaaagatcaaagcctctgttccacg
ttgatgagcttcatttgcgaattggttgagagctccccaagtattcagcaacaagtcatc
tctggtcgtggattcttggtgatctcgcatctgttgagcaaaagttccagagatcacctc
accttggagttgctccagacctttctcaaactcaccaaatacctcgtcacgtgtccctcc
aataacaccgatctattgttgaaacagcttttggaccattgtctctttaacccggcactc
tggatccacactccggccaacgttcaaaccaagttgtattcctatttggccacggatttc
ctcagtgatacccaaatctactcgaacgttcggcgagtctcgacggttcttcaaaccatg
cacacgctcaagtattactattggatcatcaaccctcacgaactgagtgggatcaatccc
aaaggaacagatggccctcggccttctcgagaagagatcaagtccatccgatcgtacatg
ctcctattcgtgaagcaactgatcatgatcgggaacggggtcaaagacgatgagctccag
tccattttgaactacgtgaccacggtgaacgaggatgacaacctccatgacatcctgcaa
atgctcatgtctctgatgtgtgaccatcccgccactctcgttccggccttcgacaccaaa
ggcggtgtcaaggccgttttcaagatgttgggctccaagtcccagaccatccggctgcaa
gcattgaaattgttaggattctttctctccagatccacgcacaagcgaaaatacgacgtg
atgaacccgaacaatttgtacacattgctggtggaaaaactgcttcagcgtgaggagacc
ctcactgtggccacgtacaatgtgttgtacgaaatcttaactgagaacgtgggacaaaac
ctgatttatgagaagcatcctgaaccagaaccgcatttccgtttggagaacccaatggtc
ttgaaagtggtagcgtctcttattcgtcaatcgaaaccgaatcagaaactggaggaggtc
aagaagctgttcctctcagacatgaccttgctttgtaacaacaatcgtgagaaccgccgg
accgttctccaaatgtccgtatggcaagaatggctcatttctatggcttatattcatccc
aagaatgccgaagagaccaaaatatccgacatggtttttgccctgttccgcatgttgctt
catcacgccgtgaaattcgaattcggtggttggcgtgtttgggtggataccttggccatc
gtccactccaaggtctcattcgaggagttcaagttacaattcaataatgtgtacgataaa
tatgacaaaagacgaaccgaccaaatcaccgatccgaagcagcgagctaagaaacccgtt
tcaaccatcacagggttggctcaagatcgagacgatgtcgatgacgaagatgtggaggat
gaagatgaagaacggtccagagagcccgggaatgaagaagaggcctttgaggaactgtct
cttgaagaagaggaggaggaagacccggctgccaaaactaaatcccatgaagaagtggat
gcttttccaactcgaaagagatatctaggtccacatccgggtaaagtctcagaagaagcc
agtggtacgcaggatccagatgggcctgcttcaaacaaagccaaagatcttaagaagcca
ccgcccacattcagtcctggtccatcccgacctcctttccgaatcccagaattccgttgg
tcctacattcatcaaagactgctctcagatgtgttgttctcgttggaaacggatatccaa
gtctggcgatcccattccaccaaatctgtgattgatttcgtgaacagtgccgagaacggt
atctttgtggtgaacacggttcatctcatttcgcaattggccgacaacctcatcattgct
tgtggaggcttgttgcctttgttggcttcagctacgtctccaaataatgagttggacgtg
ctggaacctactcaaggcatgccaatagaagtggcgataacgtttttacaaagattggtc
atgatggctgatgtgctaatatttgcctcctcattgaattttgccgacctcgaggccgaa
aagaacatgtcctcgggtggaattctccgtcagtgtctgcgtctcgtttgtacttgcgcc
gtccggaattgccttgagtgcaaggaaaaggcttcaggcggcggaggaggtggaggtcga
gtcattgtccccacgccactgggattgaccaatgaaggtgccaatcagcctccggccgcg
ggtaaaccgggtcaaccggcgaggcaattcaacaaagaggccttaagcaaggttgcactg
gacagtctgaaagttcaggcgagtggagtgaaggatttggagaaacttcttcaagatatg
gatgtcaatcgacttagggcagtgatctaccgcgatgtggaggagactaaacaggctcag
ttcctgtccttggccgtagtctacttcatctccgtgttgatggtatccaaatatcgtgac
atcttagagcctccaattccaggcggaagcaacaatggcagcacccactctcggacccaa
tccggccctcgtgggaaatgtcccccacggcctcagcctttccatgggtccgactgctcg
tgctatcaccaaaataacggcgcagactcgttgagtccgccttcgccggtttccaatcta
gacgattactatgtttgcgaatgctcttcctgtcggaatttgggcaattccgtggacatt
tgttgccaatgctgtgcctgctcagagggacatccattgaagagtcccaacaatttcggc
actccgggtcgatatcaggtccgatccgtggctttgaccggcgagagtgatgacacgttg
gaggtgtgtctcaacgaggactatgacgaggatgatctggctttggctcactcagtggct
gaaggtacgggcacgtgtgcggattgtcggagctcgacttcgcctccggagcgaggaccc
gccttcactggctggtctggacagccacgccccctgaactcgatacggagcgccatccag
actcgacacttccatcccaagatgggcaataacgggggggtacatcaccaccatcattct
cacaccgttgacacggtcacttcaatgaatagggggaaaggctgtgataaacccaacttt
gtggacgaacgacggatgtcccatgaaagctccaaaatcctcaaagatgatgaatcaagc
atgatggaggaagtgacggagagtgagctgcagatggtttcctcctctactactaattca
gcgagtggacccaatgaaaaggccgccaccaccagtccaggtcaagcctcaagtgtgagt
tcgaactcgagtgcggatgtcacggacggtgggcggcactccaaacgatcgtcgagttac
tcctctcccacctccaacaacaaggacaagaaagagttcaatggaacctcggctgcggaa
gacgctctccagacgttccaagaggtccgattggaggctgcttcggagccttcgggcagt
gagccaaccaatgcggaacgaggagagcgaatgaacgaagagatatcggttctttcgccc
atgcctcgcaatttgaatatcgcccctactcatgagagcgatagcgaggccaacaagaac
cgcccagacgacctaaacatcaagccgtttgctccgagcaaacctttgcccgttccgact
ccatccagagaggccactctcacccaaaaattagagcaagctctaggctcggtttgtcca
ttgttgcgagagatcatggtcgattttgcgccatttctctccaaaaccttggtgggttcc
catggacaggatctcctaatggaaggcaaggccatcatgactttcaagaactcctcgtcc
gtggtagagctcgtgatgttgttatgctctcaagaatggcaaaattcgctgcaaaaacac
gccggactggccttcattgaattgatcaacgagggtcgtttgttgtcccacgccatgaag
gatcacattgtacgtgtggccaatgaggccgatttcatactaaaccgcatgcgggcggat
gatgtactcaagcatgcggatttcgagtccgcttgtgggaacaccttgtctgatcgcacg
gaggaggagaaaatgtgcgaccatttaatcacagctgctcgtcgacgagatggcgtcttg
gctggacgattggtagacaaagtggtggatgtcttaagtacccgacatggagcttggtcc
aaaagggaagatgggcctcgagacttctggaagctagatgtctgggaagacgatgctcga
cgacgacgaagattgatacgaaatccattgggttctacccaccctgaggccaccttgaag
gctgcgatagagcatggagcagccgaggatgcgattgaggccgcccaagctgaatttcac
gcccacctagccgcagcgcgatcgcaaaataatcaacaatccaataatcacgacctagtg
gaagactccgagctcgttggagaggaccgagaactggatagtgactcccaagggcccatc
aatatcagcactccagccattctcgtgtcgccggggatctcgttgtggggaaccatctcg
attacgtcctcggaggtctatttcgaggttgacgaggaccacgatgagttcaagaaaatt
gactcgcaggtgttgcaatattctgaccatcttcatggaaaatggtacttctccgagatc
cgggcaatcttctcccgtcgatacttgcttcagaatacagcaattgagatctttctcgcc
tcgcgaacttcaatcatgttcgcattccaagatcaagccacggtgaaaaaggtcgtcaag
gtcctaccccgagttggagtggggatcaagtacggaatccctcagaatcgtcgtgccagt
ctcatgtcggcccggcaacttttccaagcctcgaacatgacccaaaaatggcaacgtcgc
gagatttccaacttcgagtacctcatgttcctgaacacgattgcgggtcggacctacaac
gacttgaaccaatatccaatctttccttgggtgttgaccaactacgaagatacggagatt
gacctcagctcgcccaacaactatcgagacctgagtaaacctgtgggagccttgaaccaa
tcccggcgagagtactttgaagagcgttacaacacatgggacaatgaccaaatccccccg
ttccattacgggacgcatttttccacctcagccttcgtcctcaactacctcttgagattg
gagcctttcaccacgatggtgctggccttgcaaaatggaaaattcgactaccccaatcgt
ttgttctcctcggtgaaacgagcttgggataattgccaacgggacacttccgatgtcaaa
gaattgattccggagttcttctgcttgcccgaaatgttcgtcaatatgaacggctacaaa
ttgggacggctagaggagggagaaggcgtggacgatgtggagttgcctccttgggcagcc
acaccccatgaattcgtgaggatcaaccgacaagccttggaatctgagtttgtgtcctgc
caaattcatcagtggatagacttgatctttgggtacaaacaacgaggtccggaggcgatc
cgagcgaccaatgttttctactatctcacctacgagggtagtgtggatttgaaggccatg
gccgatcccgttatgcgtgaagctgtggagaatcaaatcaaacatttcggtcagacaccc
tcccaactcctcatggaaccccatccaccgagaagttcggccatgcacctgtcgcccatg
atgttcaccccattgccggatgacgtttgcatgatcatgaagttcctgtcgaactcaccc
atctgtcacatcacggccaatacattcccgcagcttcccctgccctcggtggtgaccttg
acggcgaaccatcacttcgccatcaaccgttggaactcctcgtatgcaggtattgaagga
caacttcgttctaagaagcttgcctcgtcctccgcctcctcggccacatcctcccagtca
cagcagggtgggccagggggtggaggctcccatagccagctccaaagtggtgcctcaaca
gctcccatgaaacccccatcgacccagcaacatcatccaaccagtacgagttcgacctcc
caagctccgtcccaagctcccagctatgcagagtctcagagcccttcgccgggagctgcg
tcgctgcccttggccatggatcctattttggccgtggtgacgaatgccacgggccatcaa
gtccgcaggcatttgggcgacaatttcagtcagcgtgttgtgatgaggcatagttgcttt
gtggtcaccgtggatagccgcttcattctagcttgtggcttctgggataactccttcagg
gtgttttctgcggaatcggccaagattgtccaaattgtgtttggccattatggcgtggtc
acgtgtttagctcggtccgagtgcaacatcacctcggattgctacatcgcctcggggtcc
caagattgcaccgtcctgttgtggcattggaacgcccgttcacaaagcatcgtgggagaa
ggcgaccatcccacgcccagagccgtcctcactggccatgaccaagctgtgagctccgtt
gtgataagtgctgaattgggtttggtcatcagcggatccacggatggtccaattttggtg
cacaccacgttcggggatctcctcaggtcacttgattctcccgaagggctaacggcgccc
ctcaacatcgctttgtcccgagaaggcttcgtggcagctcactttcccggaggccacgtg
gtctcctatacggccaatggctacagactcagacatgaggtgcacaacgataagattcag
tgcatcctcctgtcgagggatggcgaatacctgatcaccgggggtgatcgcggcattgtc
gaagtttggaggaccttcaatctggcccttttgtatgcctacccggcttgtgatagtagc
gtccgatccttggctttgacccatgaccaaaagtttttgttgggtggtttgtccaatgga
gccgtggttgtgttccatattgacttcaatcgatggcatcacgagttccagcaacgatac
tga
DBGET
integrated database retrieval system
