KEGG   Tigriopus californicus (tidepool copepod): 131878688
Entry
131878688         CDS       T09700                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like isoform X1
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03020  RNA polymerase
tcf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131878688
  09124 Replication and repair
   03420 Nucleotide excision repair
    131878688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcf03021]
    131878688
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131878688
Transcription machinery [BR:tcf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     131878688
DNA repair and recombination proteins [BR:tcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131878688
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom Ogr_Delta SR1P Zn_Ribbon_TF
Other DBs
NCBI-GeneID: 131878688
NCBI-ProteinID: XP_059080745
LinkDB
Position
1:11685801..11687846
AA seq 126 aa
MNISGVEQGPGFVGIRFCQECNNMLYPREDKENRVLLYACRNCDYKQLAQNNCIYVNKIM
HEVDEITNIVADVIGDPTLPRSEDHPCPKCKHREAVFFQAESRRADDEMKLYYVCTNTNC
SHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atgaatatcagtggtgtcgaacaaggtcccggatttgtgggcatccggttttgtcaggaa
tgtaacaacatgttgtatccccgggaagacaaggagaaccgcgtgcttttgtatgcttgt
cggaattgcgactacaagcaattggcccagaacaattgcatctatgtgaacaagatcatg
cacgaagtggacgagatcaccaacatcgtggccgacgtcatcggtgacccgactttaccg
cgttccgaggatcatccttgtcctaaatgcaaacaccgagaagccgtctttttccaggct
gaatcccggcgagcggatgacgagatgaagctttattatgtgtgcaccaacacgaattgc
agtcatcgatggacggaatga

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