Tigriopus californicus (tidepool copepod): 131878690
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Entry
131878690 CDS
T09700
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04512
ECM-receptor interaction
tcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131878690
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
131878690
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tcf04147
]
131878690
00536 Glycosaminoglycan binding proteins [BR:
tcf00536
]
131878690
Exosome [BR:
tcf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
131878690
Glycosaminoglycan binding proteins [BR:
tcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131878690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
131878690
NCBI-ProteinID:
XP_059080742
LinkDB
All DBs
Position
4:complement(10493635..10504814)
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AA seq
1833 aa
AA seq
DB search
MTGLLSTPIYPGFFGHRHRWKRRTTRNDKSVIWSFVFLTLLTNIPVSIAQFGKTRRQVAT
YDNRKWNNNANNRFRNVGASDVSYNDYFGSQLQNQSPYNTVPGATGDSGCRSKGGDCCQA
MCLAEKGSRGPPGLTGPRGEQGRQGFPGVEGLPGPKGERGLDGPQGPRGSKGDRGKTGVP
GHPGFKGDHGISGIPGIPGTPGMPGCNGTDGERGDSGFPGAPGPRGFPGLPGSKGIKGEP
AYARPGAVGQKGEPGLDGSPGNPGMPGAQGLPGMKGDRGESGPEGKPGSPGDKGQKGERG
ITFYGQKGQAGQKGPRGPPGQYNGISQVGPLNPEINSTVFRGPPGDQGMKGDNGPPGPPG
LKGEKGDRGFNGLNGNLGEKGLPGPPGPRGREGRFGPPGPIGQKGDQGRDGYDGLPGRPG
QKGDPGLPGSDGPSGLPGPVGMPGGGVGTPGPIGPTGPRGFPGPPGQPGRDGFDGAPGIK
GDIGPAGGSGLPGLPGPEGPPGVKGEKGTSGQTGFPGNPGLRGERGPPGAQGLPGIKGDK
GMSIPGARGKDGFPGRPGMSGSKGERGYPGERGVPGDALKGTPGPPGQLGPIGEKGRDGM
PGRPGLPGLKGDKGLKGGECPSCFPGPKGDKGEPGKDGTDGRPGERGPSGGSGLKGERGD
DGPTGPPGLPGTGGQPGREGLPGPKGEKGKDAIVAENLLKGGSGPKGERGENGFPGPQGP
PGSPGLTGLPGPVGLPGIKGDQGPKGLDGFPGRNGVPGPPGITGPPGRPLKGDIGPPGAI
GAPGERGDDGDLGPRGEPGDCPPMEADASTVGPKGEPGIPGRRGEKAEKGEPGPMGPPGP
SGPKGDRGQQGNPGPYGTPGQPGLKGDRGIPGVIGFPGPKGDQGLPGLPGRLGDKGFKGD
AGIPGVGPPGPSGLPGMKGEKGLPGLPGKTGPAGNPGKIGFPGQKGDQGLDGLPGLYGVK
GDKGNSGPLGPQGPPGPPGPPGRDGPKGNPGPLGENGAPGMPGRPGEKGDKGFSGRDGIK
GFPGLPGRPGVPGIRGLDGLPGSKGDQGQVGFPGGPGNPGVSGNPGAPGFPGAKGDIGPI
GPNGRPGMPGQPGQKGRDGLPGPMGPRGFPGNVAAKGDKGNAGLPGPPGQVGAPGMDGIP
GTKGDSGLPGFGRPGLKGDKGERGSSGAPGFPGMKGEKGNAGMVGLPGPKGERGSNGFAG
MPGMQGLDGRPGMKGEPGIPGIDGRPGMKGNTGFPGKPGNDGRIGNPGPAGPKGYPGMPG
QRGDKGAIGLPGRPGLQGIKGDKGDRGTTGLPGLPGVKGERGFPGPEGNNGLPGDKGRDG
MPGIPGQPGMNGQKGMSGSPGVPGQSGETIKGEKGLPGVPGKQGRPGQPGFPGIKGDEGV
PGLPGRDGQKGDTGPQGFPGPRGEAGPTGPPGMPGRDGMKGNSGMPGIPGFPGQKGNNGQ
SGPPGPPGLKGEPGTPGRTGITGFPGIKGDAGDNGPPGRPGTPGLQGTKGDSGPPGPFGP
PGIQGEKGQAGRPGMPGMKGNPGVPGIRGPPGNPGLPGLPGLQGSPGIPGIKGDRGKAGF
DGVPGPPGLPGMKGDAGFEGRPGLSGPPGIPGTPGRDGQDCQADSTYLSGNLLVRHSQAA
SIPLCGEGEEKLWDGYSMLYIEGNEKAHHQDLGMAGSCINRFNTMPFLFCDVNDVCNYAS
RNDKSYWLSTNAPIPMMPVAEFAIREFISRCVVCETRANVMAVHSQDENVPDCPNGWGSL
WLGYSFAMHTAAGAEGGGQSLSSPGSCLKDFRATPFIECSGGRGTCHYFANKFSFWLATI
DPNAQFNQPIPQTLKAGTLRMRVSRCQVCMKQT
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atgacaggccttctctcaaccccaatctaccccgggttctttggacatcggcatcgttgg
aagcgaagaaccacccgaaatgacaaatctgtgatatggtctttcgtcttcctcacgtta
ttaacaaacatcccagtatccattgcacaattcggaaaaacaaggcgacaggttgctaca
tatgacaatcgaaaatggaacaacaatgctaataacaggtttagaaatgttggtgcctct
gatgtcagctacaacgactatttcggatcacaattgcaaaatcagagcccatacaataca
gttccgggggccactggtgactcagggtgcagatcaaagggtggagattgctgccaagca
atgtgcttggctgaaaagggatcacggggacctccaggattgactggtcctaggggtgaa
caaggaagacaaggatttcccggcgttgaaggattgcccgggccaaaaggagagcggggc
ttggatggacctcaaggacccagaggatcaaagggtgacagaggcaaaactggcgtgcct
gggcatcctggattcaaaggagaccacggaatatctggaataccaggaatacctggaaca
cctggaatgcctggctgtaacggaaccgacggtgagcgaggagactctggatttcctgga
gctccgggacctcgaggcttcccaggtctacctggttcaaagggaatcaaaggagaacct
gcttatgctagacctggagcagttggtcaaaagggagaaccaggtttggatggttccccg
ggaaatcccggaatgccaggagctcaaggcctccctgggatgaaaggtgacaggggcgaa
tcaggcccagagggcaaacccgggtctcctggtgataaaggccagaaaggagaaagagga
atcacattttatggccagaaaggacaggctggacaaaagggtcctcgtggacctcctggc
caatataacggaatttctcaagtgggtccacttaatcccgaaataaattccacagttttt
cgaggacctccaggtgaccaaggaatgaaaggggacaatggcccacctggaccaccaggg
ttaaaaggagaaaaaggagatcgagggttcaacgggctcaacggaaacctgggagaaaaa
ggattgcccggcccccctggaccaagaggaagagagggccgatttggtcctcccggacca
attggccaaaaaggtgatcaagggcgagatggatatgacggtttgccaggacgaccaggg
caaaagggagacccaggtttacctggaagtgatgggccatctgggttaccagggcctgtt
ggtatgcctgggggtggagttggaacgcccggacctattggccctaccggtcccagagga
tttcccggaccacctggtcagccaggacgcgacggatttgacggtgccccaggtatcaaa
ggcgatattggcccagctggaggatcaggtttgcctggattgccaggaccagaaggccca
cctggagtaaaaggggagaaagggacgtcaggacagactggattcccaggtaaccctggc
ctgcggggtgaaaggggaccaccaggtgcccaaggtcttcctggcattaaaggagacaaa
ggaatgtcaattccgggagcccgaggcaaagacggcttccccgggaggcctggtatgtcc
gggagcaagggagaaaggggctatccaggtgaacgtggagttcctggtgatgctttgaaa
ggtactcctgggcctccaggtcagcttggaccgattggagagaagggtagagatggtatg
cctggaaggcctggtttgccaggtttaaagggagacaaaggtctgaaaggaggagagtgt
ccgtcttgtttccctggtcccaagggtgataaaggagaacccggaaaggatggtacagat
ggtcgtcctggagaacgaggtccatctggtggaagtggtttaaagggtgaacgaggtgat
gatggaccaactggaccccctggacttcctggaacaggcgggcaaccaggacgagaaggc
ctgcctggaccgaaaggagaaaagggcaaagatgctattgttgctgaaaatttactcaaa
ggtggatctgggcctaaaggtgaacgaggtgaaaatggatttcctgggcctcaaggtcct
cctggttcgccaggtttgacaggattgccaggtccggttgggctcccaggcatcaaggga
gatcaagggcccaagggcttggatggatttccaggaagaaatggagtgccaggccctcct
ggaataacaggtcctccaggcagaccgttgaaaggagatattggacctccaggagcaatt
ggtgcgcctggtgagagaggagatgatggagatttgggaccaaggggagagccaggagat
tgcccaccaatggaagctgatgcatccactgtggggcccaaaggagaaccaggtattcca
ggacgacgaggcgaaaaggcagaaaaaggagaacctggtccaatgggaccccctggacca
agtggaccaaaaggggatagaggacaacaaggaaatcctgggccttatggcactcctggt
cagccgggattgaagggagatagaggaattcctggtgtaataggattcccaggaccaaaa
ggagatcaaggcttgcctggattgcctggaagattgggtgataaaggattcaaaggagat
gccggtattcccggagtcgggcctccagggccatctggcttaccaggcatgaaaggcgaa
aaaggactacctggtttacctggcaagactgggccggctggaaatccaggaaagattgga
tttcctggtcagaagggagatcaaggactggatgggcttcctggattatatggagtcaaa
ggagacaagggtaattcaggccctcttggacctcaaggtcccccaggccctcctggacct
ccaggtcgagatggtccaaaaggaaatccaggacctttgggagaaaacggagccccagga
atgcctggaagacctggagaaaagggtgacaaaggtttctctggccgagatggtattaaa
ggctttcctggcttgcctggtcgacctggtgttcccggcattagaggcttggatggtttg
ccaggatcaaagggagaccaaggccaagtaggatttcctggtggacctgggaatcctggg
gtgagtggaaatcctggcgcaccaggatttcctggagcaaagggggatataggaccaatt
ggaccaaatgggagacctggtatgcctggccagcctgggcaaaagggacgtgatgggctt
ccaggacctatgggaccaagaggttttccgggaaatgttgctgccaaaggtgacaagggt
aacgcgggacttcctgggcctcctggtcaagtgggtgctcctggaatggatgggatccca
ggaacaaagggtgactcaggtctgcctgggtttggaagacctggtcttaaaggcgacaaa
ggagagcgtggttcgtctggtgcgcctggtttccctggaatgaagggcgaaaaaggaaat
gcaggcatggttggcttacccgggcccaaaggagaacgtggttctaatggatttgctgga
atgcctggcatgcaaggtcttgacggtcgtccaggaatgaaaggagaacctggaatccct
ggaattgatggaaggccaggaatgaaagggaatactggatttcctgggaaacccggcaac
gatggaagaattggtaatcctggtccagctggtcctaaaggttatcctggcatgcctgga
caacgcggcgacaagggagctatcggtctccctgggcgacctggattgcaaggaatcaaa
ggcgataaaggcgaccgtggaacaacaggtttgcccggacttccaggagtaaaaggagaa
agaggctttccaggaccggaaggaaataatggtttgccaggagacaagggcagagatggc
atgccaggaattccaggccagccaggaatgaacggacaaaagggaatgagtggatctcca
ggagtaccaggtcaaagtggtgaaactatcaaaggcgaaaaaggcttgcctggagtgcca
ggaaagcaagggcgtcctggtcaaccagggttccccggaatcaaaggtgatgaaggtgtg
cctggtttgcctggcagagatggacaaaagggagatacaggacctcaaggctttcccggc
ccaagaggcgaggctggaccaacagggccaccaggaatgccgggacgtgatggaatgaaa
ggaaattctggcatgcctggcattccaggtttccccggacaaaagggaaacaatgggcaa
agtggtccgccaggcccgcctggtttaaagggtgagcctggtaccccaggaagaacaggg
atcacaggattccccggaataaaaggagatgcaggtgacaatggacctccaggtcgccct
ggaaccccgggtctacaaggaacaaagggagactcaggtccacccggtccatttggccca
cctggaattcagggagagaaagggcaagctggacggcccggtatgcctggtatgaaaggg
aaccctggagtccctggcattagaggacctcccggtaatccaggactccccggcttacct
ggccttcaaggttcgccaggcattcccggaatcaagggagacagggggaaagctggcttt
gatggcgttcctggtcctcctgggcttccaggcatgaaaggtgacgctggttttgaaggt
cgacctggcttatctggccctcctggtatcccaggtacacctggtcgagatggtcaagac
tgtcaagctgactcaacatatctgtcagggaatctcctcgttcgtcatagtcaagcagct
agcataccattgtgtggggaaggtgaagaaaaactttgggatggatactccatgctgtat
attgaaggaaacgagaaggcccaccatcaagatctgggtatggctggctcatgcatcaac
cggttcaataccatgcctttcttgttctgtgatgtcaatgatgtctgcaattatgctagt
agaaatgacaagagttactggctctccaccaatgctcccatccccatgatgcctgtggca
gaatttgccatccgggaattcatttccagatgtgtggtttgtgagactagagcaaatgta
atggccgtccacagtcaagatgaaaatgtgcccgactgtccaaatggttggggcagcctt
tggttgggatacagctttgccatgcacactgccgctggtgccgaaggaggcggccagtct
ctctctagccctggctcttgtctcaaagacttcagagccacgccatttatcgagtgttcg
ggagggcgtggcacttgccactactttgccaacaaattttccttctggttggccaccatc
gatcccaacgcccaattcaaccaacccattcctcaaacactgaaagcgggaaccttgaga
atgcgtgtcagccgttgtcaggtgtgcatgaagcaaacgtga
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