Tigriopus californicus (tidepool copepod): 131878806
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Entry
131878806 CDS
T09700
Name
(RefSeq) elongator complex protein 1-like
KO
K11373
elongator complex protein 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcf03016
]
131878806
Transfer RNA biogenesis [BR:
tcf03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
131878806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
HB_ELP1
Beta-prop_ELP1_2nd
TPR_ELP1
Beta-prop_WDR19_1st
DSX_dimer
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
131878806
NCBI-ProteinID:
XP_059080917
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Position
4:6595893..6600597
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AA seq
1319 aa
AA seq
DB search
MRNLVVRHSACQTLSHATCPPSPGASPAAWALAESGGLWCLHGDRLTGPDLVDWTWTAQL
PPEAAQWPCVRLLDLSDGTVVGAFEPGTLMQWQPSLYSVEEVGWVAGGVRDLVRSPDDEL
FVLITAQDTLVVMSREFDPLCEVDLHQTEFGQGAFVNVGWGQKETQFHGSAGKSAAHQAP
TPHQPVFEWDDRRPRLVWRDDGQMWAVSHVTRGEMAVRQIRIFNREGVLQATSEPLPGLE
SALAWKPSGSLIASTQRLPHKYQVVFFEKNGLRHGEIVLNFHSRTEARVTQLAWNKTSEV
LAVLATDYLSPDEPVVRILLYTCSNYHWSLKQAWSTPQVNLLHFEWDAVDPLRCHAVFSN
GEYWQWQMGFEVQVSRGFSQSNLAFHVNVDAKVLKITPFRQMVVPPPMSAFEVHFDGYIK
SVSACPDAESQEMLSINGFVVQLDSGDIHFLSTHQGESKCVKITGAGGNGFIVKSQLLYP
QGSLSVSEGVLDSLTCLSDDFLVGSLSKKLIALHISKMPDGLIARTSSLIAPETIYSISS
DPSGKVAAVQLVSGLVLKYQPHDEDLKPWLTNSTLQHPQVCVNLVVVADKKEEEVFHCLG
LTARHRLYLDGKEIASNISSFVVHSDFLLATTMKHELRCLPLINLTQAENEGSWFSESVR
ALERGSKLVMAVSEDSKVVLQMPRGNLEVIHPRALTLYLVKNMLDNGKYGRAMDTLRRQR
INLNLLVDHSPMKFQESIRDFIEQIQDISRLCLFIADLSNEDCTLTMYSSIYPESSGPFH
WPENSSKVDTITNLMLKVLATDEEKNILPIVSCIIKNSKSDLENALQRIDYMRAQNMAVA
EDALQYLLLLVDVNKLFDVALGMYDFDLVLFVAEKSQKDPKEYLPFMNELNSYPLAYRKY
KIDIHLKRYAKALSNLAQEQETTYDEECLSLIRNQRLYIDGMIIFRKKNELFKAVCEAYG
DYLTVKNYYEDAALTYQRGGWSLKALDAWERSLNFRYCLGLAQTLKLPQNELLALCQRLV
QSLKEERKYSEAALIHMEYLSDGEEGVACLIEGHAWAEAFRWIAKLNRPDLKETHLLPSL
KAFGETTWENIQRNKEAFREKLERLKRVLDMKTKALQGHFDDVDLNVEDGDLYSDTTSMT
GTASTISGKKSNAASLKTRNTQRSKSSRNRRKHERKKYSTKEGSTYEDLGLIVSLHELIT
AIYKSTAEVGELLRGLVQIDDLEAAVKIQRGMSQTLDLVKTAIPSIWKATPTVGLLGEVT
EPDRNQFGPNATTADIVSNKRPNEDYSPEYNLLAAHFRIPPSNVPSEYWKLQILECPKV
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacttggtggttcgccacagtgcgtgtcagacactgagccacgccacctgtccc
ccgtcacccggggcgagtccggcggcttgggccttggccgaatccggcggactctggtgc
cttcacggggatcgtctgacggggcccgacctcgtggattggacctggaccgctcaactg
ccaccggaggccgcccaatggccttgcgtacgtctgctagacctgtcggacggcactgtg
gtcggggccttcgagcccggcacgctgatgcaatggcagccttcgttgtacagcgtggaa
gaagtgggttgggtggccggcggcgtgcgcgatttggtgcgcagtccggatgacgagttg
ttcgtgttaatcacggctcaggacacgttggtagtgatgagccgtgagttcgacccgctc
tgcgaggtggatttgcatcaaacggagttcgggcaaggcgcttttgtcaatgtgggctgg
ggtcagaaagagacgcagtttcacggctcggccggtaaatctgcggcccatcaggccccc
acgccccatcaacccgtgtttgaatgggatgaccgccgacctcgtttagtgtggagggat
gacgggcaaatgtgggccgtgtcccatgtaacacgaggcgaaatggccgtgcggcaaatc
cgtatcttcaatcgggaaggtgtgcttcaggctacctctgagcccttgcccgggttggag
tcggccttagcctggaagccctcggggtcgttgatcgcttccactcaaagattgccccat
aaatatcaggttgtgttcttcgagaagaatggacttcgccacggcgaaatcgtcttgaac
tttcatagccgaaccgaagctcgcgtcactcagttggcttggaataaaacttcggaagtc
ttggccgtactggccacggactatttatcgccggacgaacctgtggtccggattctttta
tatacctgcagcaactaccattggtcgttgaaacaggcctggtccaccccccaagtcaat
ctcctgcacttcgaatgggatgctgtggatcccctcagatgtcacgccgtgttttcgaat
ggcgagtattggcaatggcaaatgggatttgaggtccaggtctctcgcggtttttcccag
tcgaatctggcgtttcacgtaaatgtggacgctaaagtgttgaagatcactcccttccgt
caaatggtcgtcccaccccctatgagtgcctttgaagttcacttcgacggatacattaaa
agcgtgtcggcttgtccagatgctgaatcgcaagaaatgctgtccatcaatggatttgtg
gtccaattagattcaggcgacattcacttcctttcgacacatcagggcgaatcaaaatgt
gtaaaaatcacgggtgcgggtggaaacggcttcatcgtgaaaagtcagcttttgtatccg
caaggcagcttgtctgtttcggaaggagttttagactcgctgacctgtttatccgatgat
tttctcgtgggttcgctgagtaaaaaactgattgctcttcatatcagtaagatgcccgat
ggtttgatagcccgaacgtcctctctgattgcacctgagaccatatattcaatttcaagc
gatccttcggggaaagtcgctgccgttcaattagttagcggattggttctcaaataccaa
ccccatgacgaagacctgaagccctggttgacgaacagcactcttcaacatccgcaagtg
tgcgtcaacttggtcgtggtggcggacaaaaaagaggaggaagtgtttcattgcttaggc
ctcactgctagacatcgtttgtatttggatggcaaagagatcgcctccaacatttcatct
ttcgtggttcattcggatttcttgttggccaccaccatgaagcatgaattgagatgttta
ccgcttatcaacttgacccaagctgagaacgagggctcgtggttctcagagtctgtccgt
gccttagagagaggttcaaaactggtgatggcagtgtcagaggactcgaaggtggtcctc
caaatgccgagaggaaatctggaggtgatccacccccgagctttaactctctacctggtc
aaaaatatgttggataacggaaaatacggaagagctatggatacacttcgaaggcaaagg
atcaatctcaatctgttggtcgatcacagcccaatgaaattccaagagtctattagggat
ttcatcgaacaaattcaggatatctcgaggctgtgccttttcatagcggatttatcaaat
gaagattgcaccttgaccatgtactcttcgatttatccggagtcatctgggccttttcat
tggcccgaaaactcgagtaaagttgataccattactaatctgatgttaaaggtgttggcc
accgatgaagaaaaaaatattttgcccattgtgtcttgtatcatcaagaattcaaaatcc
gacctcgagaacgcacttcaacggatcgactacatgagagcccagaacatggctgttgct
gaggatgccttgcagtatcttctgcttttggtggatgtgaataaacttttcgatgtggcc
ttgggcatgtatgactttgatttggtgctgtttgtggcggaaaagtctcagaaagatccc
aaggagtatttgccattcatgaacgagctcaattcctacccattggcatatcgaaagtac
aagatagatattcatttgaagcgttatgccaaggccttaagcaatcttgctcaagaacaa
gagacaacttatgacgaagagtgcttgtctttgatccgcaaccaaagactttacattgat
gggatgatcatatttcgaaagaaaaatgagcttttcaaggctgtgtgtgaagcttatggt
gattatttgactgtgaaaaattattatgaagacgctgcccttacatatcaacgaggtgga
tggtctctaaaagctttggacgcatgggaaagatccctgaattttaggtattgtttggga
ctggctcagaccttaaagttaccacaaaatgagctcctggctttgtgccagagactggtt
cagagtctcaaggaggagaggaagtattcggaggctgctttgatccatatggaatatctc
agtgatggcgaggaaggcgtcgcttgtctcattgaaggacatgcgtgggccgaagcgttc
cgatggattgccaagctgaatcgtccggatctcaaggaaacccatcttcttccaagtcta
aaggcatttggtgaaaccacttgggaaaatattcaacggaataaagaggcgtttagggaa
aagctggagcgactgaaaagagttcttgacatgaagaccaaggcattacaagggcacttt
gatgatgttgatttgaatgtggaagatggcgacctctattcagacacaacctcaatgact
ggaaccgcatcaaccatttcgggcaagaaatccaacgcagcatccttaaagaccagaaat
acacagagatcgaaatccagccgaaatcggaggaagcatgagagaaaaaagtattccacc
aaagagggtagtacttacgaggacctggggctaattgtttcacttcatgaactcatcacc
gctatctacaaatccaccgcggaagttggagaactgttacgaggcctcgttcaaatcgat
gacttggaagcggccgtcaaaattcaaagaggcatgtcacaaacactcgaccttgtgaaa
acagccatcccttccatttggaaggcgactcccactgtaggattattgggagaagtgacg
gagccagatcggaaccaattcggtcccaatgccaccacggctgatattgtgagcaacaaa
cgccccaatgaggactactctcctgaatacaatttgttagcggcccattttagaattcct
ccctctaatgtgcccagtgagtattggaaattgcaaattttggaatgtccaaaggtttag
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