Tigriopus californicus (tidepool copepod): 131879049
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Entry
131879049 CDS
T09700
Name
(RefSeq) transcription factor Sox-2-like isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131879049
Transcription factors [BR:
tcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
131879049
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
131879049
NCBI-ProteinID:
XP_059081231
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Position
4:complement(7216950..7222886)
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AA seq
446 aa
AA seq
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MLAMESSPDLKGEYPKYGSGPMGPSGTLTSLGSLVSHPSHTSSLYSAAAMAGYGNYSHHI
PPASHSPTDYTKSTLSHHQTQLPQNSPTLSSGSGGPSPTPSHNNNIKGLGSKAQDDKNNP
DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGTEWKTLSESEKRPFIDEAKRLR
ALHMKEHPDYKYRPRRKTKTLMKKEKYPLTGGLIPGDPSRANSQSSAVAARDMYSSMNGY
MPNGYHGYDPSMYSQSPYAGYGRYDSMAAAAGMYTSGSNVASSYVNGAYSAMYGGSNPTG
GSGSTMVPDGSPYGSMHGGNLSPGQQQQHSPGSVKSDAGVSMPSESPGAYVKREVTPPAG
SGEHPNHVPHQQTDLNRMISMYLPGDAAAAAAGDPNAQSRIQSMYAGHYQAMAAAVGPPP
PGHHHPGHPSVGSDHMSHPQMSMAHM
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccatggagtcctcccctgacctgaaaggggaatatcccaagtacggctcgggt
ccgatgggtccatcgggcacgttgacctccttgggatcgctggtctctcacccctcccac
acctcttccctatattcggccgctgctatggccggatatgggaactacagccatcatata
cctccagcttcacattcgcccacagactataccaaatccaccctttctcatcaccaaacc
cagttgcctcaaaattcgcccactctgtccagcggttcgggcggtccatcgcccacccct
tcccataacaacaacatcaaaggactgggatccaaggctcaagacgacaagaacaacccg
gatcgtgtgaagcgacctatgaatgctttcatggtgtggagtcgtgggcagaggcggaag
atggctcaagaaaatcctaagatgcacaattcggaaatctccaagcgtcttggaacggaa
tggaagactttgtcagaaagtgagaagagacctttcattgacgaggccaaacgactacgt
gccctccacatgaaggaacaccctgattacaagtacaggccgagacgaaagaccaaaacg
ttaatgaagaaagaaaaatacccgcttactggcggattaatacccggagatccttcccga
gctaactctcagtcaagtgcagtggcggcgagagatatgtacagctccatgaacgggtac
atgcccaacgggtatcatgggtacgacccaagcatgtacagtcagtccccgtacgctgga
tatggccgatacgatagcatggcggccgcggcgggcatgtatacctcgggctccaatgtg
gcatcgtcctatgtgaacggtgcttactcggccatgtatggcggctccaacccaacgggt
ggatcgggaagcacaatggtgcctgatggctctccgtatggttccatgcacggaggcaac
cttagtcccggccaacagcaacaacacagccctggttctgtcaagtcagatgccggtgtg
tccatgccctcagagtcgccaggtgcttacgtgaaacgggaggtgactccccccgctgga
tccggggagcatcccaatcatgtaccacatcaacaaacggatctcaatcgcatgatttcc
atgtatctccctggagatgcggccgccgcggctgcgggcgatcccaacgcccagtctagg
atacaatcaatgtacgcaggccactaccaagccatggcggcggcggtcggacctcccccg
cccggtcatcaccatccgggtcatccatccgtgggatcagatcacatgagccatcctcaa
atgtccatggcccacatgtag
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