Tigriopus californicus (tidepool copepod): 131879075
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Entry
131879075 CDS
T09700
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03015
mRNA surveillance pathway
tcf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131879075
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
131879075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131879075
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
131879075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
131879075
NCBI-ProteinID:
XP_059081263
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Position
4:840146..842969
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AA seq
494 aa
AA seq
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MSDAGNNGGGVDIDLYADVEDFGNTSLTHEDDDQDDDPMGGGGGTRQGSQTRDTAGDLYD
DVLASSGSDIKRETARSEDGREGSVPSTPTQTSGGLGGHTRRYQMYVGNLTWWTTDQDIS
DAVQSVGIGDFIEVKFHENRANGQSKGFCCVSLGSETSMKVLMEKLPKKELHGQNPVVTY
ATKQALIQFESQSKTRPPAQPPASAPLRGSHPPMGGGLGRPPLGRGMLRGPPPPFSRPPP
GVSRPMLARPPPLGGPPPLMANPPPIIPRVPPPGIPPAPHVNPAFFPHGAPPASTSYGVA
PGHALSEIEFEEIMGRNRTVSSSAIARAVQDAAAGEYASAIETLVTAISLIKQSKVAHDD
RCRILISSLQDTLHGIENKSYGARRERSRSRERERHRPARRRSYSRERERERERDRERER
DYRPSREYYHRDHRERSRSRDRDPHHRPPREERYYDERYKEREYRERDRESSRSRREEMD
REHLDREKDRPPRH
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgccgggaacaacggcggtggggtggatatcgatttatacgcggatgtcgag
gattttggcaataccagcctgacgcacgaggatgacgaccaagatgacgaccccatgggg
ggcggtgggggcacccgacagggtagtcagacgcgagatacggccggcgacttgtacgat
gacgtgttggcttcgtcgggatcggatatcaaacgcgaaacagctcgatccgaagatggg
cgggagggctcagtgccctccacgcccacccagacaagtggaggcctaggcggtcacacc
cggcgttaccagatgtatgtgggtaatttgacctggtggaccacggatcaagatatcagc
gatgccgtgcagagtgtgggcattggcgacttcatcgaggtcaagttccacgagaaccgc
gccaacggacagtccaagggcttttgttgcgtctccttgggctcggagacgtcgatgaag
gtgctcatggagaagttgcccaagaaggagttgcacggacagaacccggtggtcacgtat
gccaccaagcaagccctgattcagttcgagtcgcagagtaagacgcgacccccggcccaa
cctccggctagtgccccattgcgcggctcacatccacccatgggcggtgggctgggccgt
ccccctttggggcggggtatgctgcgcggccccccaccgccctttagccgacctccgcct
ggcgtgagtcgtcctatgttggctcgaccacccccgttggggggtccgcctccactcatg
gccaatccgccgccgattattccccgtgtgccaccgccgggcattcccccggctcctcac
gtcaacccggccttcttcccacacggggccccgcccgcttccacttcgtacggcgtggct
cccgggcacgctctcagtgaaatcgagtttgaagagattatgggccgcaatcgcactgtg
tccagctcagccattgcccgcgccgttcaggatgccgcggccggcgaatatgccagcgcc
attgaaactctggttacggccatatccctgatcaagcagtcgaaagtggctcacgacgat
cgttgtcgaatcctgatatcctcgctgcaagacacacttcacggtatcgagaacaagagc
tacggtgctcgacgggaacgctcgcggtctcgcgagcgtgagcgccaccggcctgcccgc
cgtcggtcttacagccgtgagcgcgagcgcgaacgcgaacgtgatcgtgaacgtgaacgc
gactatcgaccatcgcgcgaatactaccatcgagatcaccgagagcgttcacgttcccga
gatcgtgacccacaccatcgacccccgcgtgaggagcgctattatgatgaacgttacaag
gagcgagaatatcgggaacgcgaccgcgagtccagtcgaagccgtcgcgaagaaatggat
cgcgaacacctggaccgcgagaaagaccgccctccccgccactaa
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