Tigriopus californicus (tidepool copepod): 131879128
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Entry
131879128 CDS
T09700
Name
(RefSeq) DNA topoisomerase 3-alpha-like
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03440
Homologous recombination
tcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131879128
03460 Fanconi anemia pathway
131879128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcf03032
]
131879128
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131879128
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
131879128
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Topoisomerases
131879128
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
131879128
FA (Fanconi anemia) pathway
131879128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Motif
Other DBs
NCBI-GeneID:
131879128
NCBI-ProteinID:
XP_059081342
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All DBs
Position
1:<11265918..11274427
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AA seq
642 aa
AA seq
DB search
MLISLGRRVVTPPGSRQSFVGLRPLTVHPATTMPIKVLNVAEKNDAAKNIAALISHGQSL
RREGFSKFNKLYEFRCQVQGQNCDMTMTSVSGHLMGLDFGPHYRKWYSCQPSQLFDLPVE
KKCPDNMLPIKRTLEREAKKAQWLIIWTDCDREGENIGFEVIDVCRAVKPSLKIFRATFS
EITLPSVTRALENLGQPNLRVSQAVDVRQELDLRIGAAFTRFQTMRLQKKFPTKLANKLL
SYGSCQFPTMGFVVERYKAIENFVPEAFWKIRVFHKIDDVNVEFHWRRLRLFDETAAQSY
HDVCLENPIAKVEDCKSKPKSKWRPLPMDTVELEKLGARKLKLSAKVVMQAAEKLYTQGF
ISYPRTETNIFPKELNLRPLVEIQTRDQRWGDFAGGILQHGPNPRPGKKSDQAHPPIHPT
KLAANLSGNEARVYELIVRHFLACVSQDALGKETTVNIDINGEKFIAHGLTVVQRNYLEI
YIYDKWSDKEIPDYVQIHTFEPSQIDLTPGHTQPPNLLTEADLISLMDKHGIGTDATHAE
HIETVKSRDYIGVQDRDKLVPGVIGIALCDGYDAMGFEMSKPNLRAGLEADLKSVCEGGR
QPDVVLREQIAKYKSLFQIAAQQVTKIDEACARYLNEVPQNQ
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgctcatttcgctcggacgacgggtggtcacgcctcctgggagtcgacaaagtttcgtg
gggctccgcccattgacagtccatcctgccaccaccatgcccatcaaagtgttgaacgtg
gctgaaaagaacgacgcagccaagaacattgcggctttaatttcccacggtcaaagctta
cggcgtgaagggttctccaaattcaataagctctacgaattccgatgtcaagtccaaggt
caaaactgcgacatgaccatgacctccgtgtccggtcatctcatggggctggattttggc
ccccattaccgaaaatggtattcgtgtcaaccctcccagctcttcgatctgcccgtggaa
aagaaatgtcccgataatatgctgcctattaagcgaaccttagagcgggaagcgaaaaag
gctcaatggttaatcatttggacggattgtgatcgagaaggcgaaaacatcggctttgaa
gttattgatgtgtgtcgagcggtgaaacctagcttgaagatatttcgggcgaccttctcc
gagatcacacttccgtcggtcacgcgcgctctagaaaatctgggacagcccaatctacgg
gtcagtcaggccgtcgatgtaagacaagaattggacctccggattggcgcggccttcacg
cgatttcaaacgatgcgccttcaaaagaagtttcccaccaaattggctaataagcttctt
agttatggaagctgccaatttcccaccatgggctttgtggtagagaggtacaaagccatc
gagaactttgttcccgaggcattttggaaaataagagtgtttcacaaaatcgacgatgtg
aacgttgaattccattggagacgcttaagactcttcgatgaaactgctgcacaatcttac
catgacgtttgcctagaaaatccaatagctaaagtggaggattgcaagagtaaacccaag
agcaaatggcgacctttgccaatggacactgtggaactcgaaaagcttggcgctcggaaa
ttgaaactgtcggctaaagttgtgatgcaggccgccgagaagctctacacgcaaggattt
atctcatatcccagaacggagaccaacatttttccaaaagaactcaatttgcgacctctg
gtggaaattcaaactcgagatcagcgctggggagatttcgcgggtggaattctccaacat
ggacccaatcccagaccaggcaaaaaatcggaccaagctcatccaccgatccaccccacc
aaattagccgccaacttgtcagggaatgaagcccgggtttacgagttgattgtgaggcat
tttttggcttgtgtgtcgcaagatgccttgggcaaggagaccacggtcaatatcgatatc
aatggagagaaattcattgcccacggcttgaccgtggtccaaaggaactatctcgagatc
tatatctatgataaatggtcggataaggagattccggattatgtgcagattcacaccttt
gagccttcgcaaatcgatttgaccccaggtcacactcaaccgcccaaccttttgaccgag
gccgacctgatctctttgatggataaacacggcattggaacggatgcgacgcatgctgag
catattgagacggtcaagagccgcgattacattggtgtacaagaccgcgataaactcgta
cctggggtgattggcatcgccttatgtgatggctacgatgccatgggctttgaaatgtcg
aagcccaacttgcgagccggattggaggctgacttgaaaagtgtatgtgaaggcgggaga
cagcctgacgtggtgcttagggaacaaatcgccaagtataaaagcttgttccagatagcc
gctcagcaagtaaccaaaattgacgaggcgtgtgcccgatacctcaatgaagttcctcag
aatcagtag
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