| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts 1-like
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| KO |
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| Organism |
tcf Tigriopus californicus (tidepool copepod)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:tcf00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131879192
03015 mRNA surveillance pathway
131879192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:tcf03019]
131879192
Enzymes [BR:tcf01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131879192
5.6.2.5 RNA 5'-3' helicase
131879192
Messenger RNA biogenesis [BR:tcf03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131879192
mRNA cycle factors
Common to processing body (P body) and stress granule
131879192
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
4:4108885..4113959
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| AA seq |
1150 aa
MESSLTFLDPEDQELALGDTQGDDFAFQFTLPSQSQSHNTGTMPTGLGRSDFDLGGFGAH
ALSQSQSQSVAGVGGAFLANGGSNLLLSETTHELQFEDEDEAELRREARGRTPTQTGPTR
PMGPTGATAEVMSPALGAATMGPSQETGLALVEGEVPATACKYCGIHDPASVVLCAICQK
WFCNGRGNTSGSHIVNHLVRAKHKEVILHKDGPLGETILECYSCGTRNVFVLGFIPAKAD
SVVILLCRHPCSSQNALKDMNWEQDQWRPLIHDRSFLSWLVKVPSDAEQLRARQISATQM
NKLEDMWKDNVEADFVDLEAPGRDDEPAQVLLRYEDGYQYQNIFGPLVKLEADYDKKWKE
SQTQENIDVRWDQGLNKKRIAYFNLPKNDTDLKLMPGDELRLRYLGDRQRPWSGVGHVIK
VPDNFGDEVGIEMKSNAGIPSDCTNNFVIDFVWKATSFDRMQNALKKFAVDDSSVSTYIY
HKLLGHDVEDVVFRSQLPRHFSATNLPELNRSQVFAVKHALQRPLSLIQGPPGTGKTVTS
ATIVFQLVKQSGGPVLVCAPSNTAVDQLTQKLDQTGLKVVRVCAKSREAIDSPVGHLALH
NQIKNLEGFSELRKLQQLKDETGELSSSDEKRFRALRKQAEKDLLDVADVVSCTCIGAGD
PRLTRMRFSSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKGGLSQ
SLFERLVVLGIRPLRLEVQYRMHPELSAFPSNFFYDGTLQNGVSGEDRRLNIDFPWPQPE
KPTFFYASTGQEEIAGSGTSYLNRTEASNVEKLTTNFIKAGIKSDQIGIITPYEGQRAYL
VQFMQYQGPLHSKIYQSIEIASVDAFQGREKDIIIISCVRSNDYQGIGFLADPRRLNVAL
TRAKYAAIVVGNPKVLAKQLLWNHLLQHYKDNGILVEGPINNMKVSPIQFPKPKRLNNAF
NPGTHFMNTSTFNAKEALATPFQASSHPGGGSRANSNHHLNLGRNGPQNSSSNFHRGQYV
GHDNMNTIQDDFGKMQATLGNMPIPVGMFVNMSHIPPRFFNKSDPRTNHYRGHGGASNTQ
SSMLSQEGDRTQNNTLTQSNNLSLAMSQNEFGSDFSQNEMSQDVGRNRSTMDGFLSQDSM
YQGPRFHSQN |
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| NT seq |
3453 nt +upstreamnt +downstreamnt
atggaatcgtcgctgacgtttctggatcctgaggaccaggaattggccttgggcgacacg
caaggcgatgatttcgccttccagtttacgctgccctcgcagagtcaaagccacaacacg
ggcacgatgcccacgggtctaggacggtcggatttcgacttgggcgggtttggagcccac
gccttgtcccaatcccaatctcagagtgttgccggggtgggcggcgcctttttggccaac
ggcggctccaatctcctcttgtccgaaaccacgcacgaactccaatttgaagatgaagac
gaggcggagctacgacgggaggcgcgtggacggacgccaacccagacggggccgacgagg
ccgatggggccgacgggggccactgcggaagtcatgagccccgctcttggagcggctacg
atgggtccgtctcaagaaaccggtttggccttggtggaaggggaagtgccagccaccgct
tgcaaatattgcggcatccacgacccggccagcgtcgttttgtgcgccatttgccaaaag
tggttttgcaatgggcggggcaatacttccggttcgcatattgtcaaccatctggtgcga
gccaagcacaaggaggtcatcttacacaaagacgggcctttgggtgagaccattctcgag
tgctactcgtgtggcacccgcaacgtgtttgtgttgggcttcattccggccaaagccgat
tcggtcgtcatcttgttgtgtcgccatccgtgttcctcgcaaaatgcgctcaaggacatg
aactgggagcaagaccaatggcgtccgctcatccacgaccgctcctttctgtcctggttg
gtcaaagtgccgtccgatgccgagcaactccgggctcgccaaatcagcgccacccaaatg
aacaagctcgaggacatgtggaaagataatgtggaagccgattttgtcgacctagaggcc
cctggccgcgatgatgagcccgcgcaagtcttgctccgttacgaagacggttatcagtat
caaaacatttttggcccattggtcaagttggaggcggattatgacaaaaagtggaaagaa
tcccaaacccaagagaacatcgacgtgcgttgggatcagggcttaaacaaaaagcgcatt
gcttacttcaatttgccgaagaacgacaccgacttgaaactcatgcccggcgatgaattg
cgattgcgctatttaggcgatcgtcaacggccctggtccggcgtaggtcatgtcatcaaa
gttcccgataatttcggcgatgaagtgggcattgaaatgaaaagtaatgcaggcatccca
tccgattgcacaaacaactttgtcatcgatttcgtatggaaagctacgagtttcgaccga
atgcagaatgccttgaagaaattcgctgtggacgactcgtccgtgtccacgtatatctac
cataagcttttgggtcatgatgtcgaggatgtggtgtttcgttcccaattacctcgccac
ttctcggccacgaatttgcccgaattgaaccgatcccaagtatttgccgtcaagcacgcc
cttcaacgaccactttccctcattcaggggcccccaggcacgggcaagaccgtcacctcg
gccacgatcgtgttccaattggttaagcaaagcgggggacccgtgttggtgtgtgcaccg
tctaacacggccgttgaccaactcactcaaaagctggatcaaactggcctaaaagtggtg
cgagtatgtgccaagtcgagggaggccatcgactctccagtgggacacttggcgctccac
aaccagatcaagaatctggagggattctcggaactaagaaaacttcaacagttgaaggac
gaaacaggagagttgtcgtcaagtgacgagaaacgctttcgagctctgcgcaaacaagcc
gagaaagatcttttggatgtggccgatgttgttagttgcacttgcattggtgcgggagat
cctcgcctgacgcgaatgagattttcctctatcctcatcgatgagagcatgcaagccacc
gaacccgagtgcatggttcctgtcgttctaggagctaagcaactcatcctagtcggcgat
cattgccaactcggccccgtggtgatgtgcaagaaagctgccaagggaggactgagccaa
tccttgtttgagcggcttgtcgtgctaggaattcgtcccttgagattggaagttcagtat
cgaatgcaccccgagttatctgccttcccatccaacttcttttacgatggtacactccaa
aatggtgtgagtggcgaagatcgtcggttaaacatcgatttcccttggcctcagccggaa
aaaccgacgttcttttatgcctctactggtcaagaagagattgcgggatcgggaacgtct
tatcttaaccggactgaagcatcaaatgtcgagaagttaaccacaaacttcattaaagcg
ggcataaaatcggaccaaattggaataatcacgccttatgaagggcaaagagcgtacttg
gtgcaattcatgcaatatcaaggtccgcttcactcgaaaatatatcagagcatcgaaatt
gcgagcgtagatgcgttccaaggccgagagaaggatatcatcattatatcctgtgtccga
tccaatgattatcaaggcattggctttctcgcagatccacgaagactgaacgtggcttta
actcgggccaaatatgcggctattgttgttgggaacccgaaagttctggccaagcaattg
ttatggaaccacttattgcaacattacaaagacaatggaatcctagtggaaggtcccatc
aacaacatgaaagtatctcctattcaattcccaaaaccgaagcgcctcaacaacgcattc
aacccagggacccatttcatgaacacctcgacctttaatgctaaggaggctttagccact
ccgttccaagcgtcatcccatccaggaggaggaagtagagccaatagcaaccatcacctg
aacttgggtagaaatggccctcaaaatagctcaagcaacttccatcgtggtcaatatgtg
ggacatgacaatatgaacaccattcaggatgattttggaaaaatgcaagccactcttggt
aacatgcctattcctgtgggcatgtttgtcaacatgtcacacattccaccgcgattcttc
aacaaatctgatcctaggaccaatcattaccgtggacatggaggagcaagtaacacgcaa
tcgagcatgttatcgcaagagggcgatagaacccagaacaacacactgacccaaagcaat
aatttgtctttggcaatgtcacagaacgagtttggatccgatttctctcaaaacgaaatg
tcccaggatgtggggaggaaccgctctaccatggatggatttctttcacaagattccatg
taccagggaccaagatttcactcccaaaattga |
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