Tigriopus californicus (tidepool copepod): 131879192
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Entry
131879192 CDS
T09700
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
tcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131879192
03015 mRNA surveillance pathway
131879192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131879192
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131879192
5.6.2.5 RNA 5'-3' helicase
131879192
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131879192
mRNA cycle factors
Common to processing body (P body) and stress granule
131879192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NAT10_TcmA_helicase
ATPase
NPHP3_N
nSTAND3
SRP54
AAA_16
AAA_22
AAA_5
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
131879192
NCBI-ProteinID:
XP_059081416
LinkDB
All DBs
Position
4:4108885..4113959
Genome browser
AA seq
1150 aa
AA seq
DB search
MESSLTFLDPEDQELALGDTQGDDFAFQFTLPSQSQSHNTGTMPTGLGRSDFDLGGFGAH
ALSQSQSQSVAGVGGAFLANGGSNLLLSETTHELQFEDEDEAELRREARGRTPTQTGPTR
PMGPTGATAEVMSPALGAATMGPSQETGLALVEGEVPATACKYCGIHDPASVVLCAICQK
WFCNGRGNTSGSHIVNHLVRAKHKEVILHKDGPLGETILECYSCGTRNVFVLGFIPAKAD
SVVILLCRHPCSSQNALKDMNWEQDQWRPLIHDRSFLSWLVKVPSDAEQLRARQISATQM
NKLEDMWKDNVEADFVDLEAPGRDDEPAQVLLRYEDGYQYQNIFGPLVKLEADYDKKWKE
SQTQENIDVRWDQGLNKKRIAYFNLPKNDTDLKLMPGDELRLRYLGDRQRPWSGVGHVIK
VPDNFGDEVGIEMKSNAGIPSDCTNNFVIDFVWKATSFDRMQNALKKFAVDDSSVSTYIY
HKLLGHDVEDVVFRSQLPRHFSATNLPELNRSQVFAVKHALQRPLSLIQGPPGTGKTVTS
ATIVFQLVKQSGGPVLVCAPSNTAVDQLTQKLDQTGLKVVRVCAKSREAIDSPVGHLALH
NQIKNLEGFSELRKLQQLKDETGELSSSDEKRFRALRKQAEKDLLDVADVVSCTCIGAGD
PRLTRMRFSSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKGGLSQ
SLFERLVVLGIRPLRLEVQYRMHPELSAFPSNFFYDGTLQNGVSGEDRRLNIDFPWPQPE
KPTFFYASTGQEEIAGSGTSYLNRTEASNVEKLTTNFIKAGIKSDQIGIITPYEGQRAYL
VQFMQYQGPLHSKIYQSIEIASVDAFQGREKDIIIISCVRSNDYQGIGFLADPRRLNVAL
TRAKYAAIVVGNPKVLAKQLLWNHLLQHYKDNGILVEGPINNMKVSPIQFPKPKRLNNAF
NPGTHFMNTSTFNAKEALATPFQASSHPGGGSRANSNHHLNLGRNGPQNSSSNFHRGQYV
GHDNMNTIQDDFGKMQATLGNMPIPVGMFVNMSHIPPRFFNKSDPRTNHYRGHGGASNTQ
SSMLSQEGDRTQNNTLTQSNNLSLAMSQNEFGSDFSQNEMSQDVGRNRSTMDGFLSQDSM
YQGPRFHSQN
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgtcgctgacgtttctggatcctgaggaccaggaattggccttgggcgacacg
caaggcgatgatttcgccttccagtttacgctgccctcgcagagtcaaagccacaacacg
ggcacgatgcccacgggtctaggacggtcggatttcgacttgggcgggtttggagcccac
gccttgtcccaatcccaatctcagagtgttgccggggtgggcggcgcctttttggccaac
ggcggctccaatctcctcttgtccgaaaccacgcacgaactccaatttgaagatgaagac
gaggcggagctacgacgggaggcgcgtggacggacgccaacccagacggggccgacgagg
ccgatggggccgacgggggccactgcggaagtcatgagccccgctcttggagcggctacg
atgggtccgtctcaagaaaccggtttggccttggtggaaggggaagtgccagccaccgct
tgcaaatattgcggcatccacgacccggccagcgtcgttttgtgcgccatttgccaaaag
tggttttgcaatgggcggggcaatacttccggttcgcatattgtcaaccatctggtgcga
gccaagcacaaggaggtcatcttacacaaagacgggcctttgggtgagaccattctcgag
tgctactcgtgtggcacccgcaacgtgtttgtgttgggcttcattccggccaaagccgat
tcggtcgtcatcttgttgtgtcgccatccgtgttcctcgcaaaatgcgctcaaggacatg
aactgggagcaagaccaatggcgtccgctcatccacgaccgctcctttctgtcctggttg
gtcaaagtgccgtccgatgccgagcaactccgggctcgccaaatcagcgccacccaaatg
aacaagctcgaggacatgtggaaagataatgtggaagccgattttgtcgacctagaggcc
cctggccgcgatgatgagcccgcgcaagtcttgctccgttacgaagacggttatcagtat
caaaacatttttggcccattggtcaagttggaggcggattatgacaaaaagtggaaagaa
tcccaaacccaagagaacatcgacgtgcgttgggatcagggcttaaacaaaaagcgcatt
gcttacttcaatttgccgaagaacgacaccgacttgaaactcatgcccggcgatgaattg
cgattgcgctatttaggcgatcgtcaacggccctggtccggcgtaggtcatgtcatcaaa
gttcccgataatttcggcgatgaagtgggcattgaaatgaaaagtaatgcaggcatccca
tccgattgcacaaacaactttgtcatcgatttcgtatggaaagctacgagtttcgaccga
atgcagaatgccttgaagaaattcgctgtggacgactcgtccgtgtccacgtatatctac
cataagcttttgggtcatgatgtcgaggatgtggtgtttcgttcccaattacctcgccac
ttctcggccacgaatttgcccgaattgaaccgatcccaagtatttgccgtcaagcacgcc
cttcaacgaccactttccctcattcaggggcccccaggcacgggcaagaccgtcacctcg
gccacgatcgtgttccaattggttaagcaaagcgggggacccgtgttggtgtgtgcaccg
tctaacacggccgttgaccaactcactcaaaagctggatcaaactggcctaaaagtggtg
cgagtatgtgccaagtcgagggaggccatcgactctccagtgggacacttggcgctccac
aaccagatcaagaatctggagggattctcggaactaagaaaacttcaacagttgaaggac
gaaacaggagagttgtcgtcaagtgacgagaaacgctttcgagctctgcgcaaacaagcc
gagaaagatcttttggatgtggccgatgttgttagttgcacttgcattggtgcgggagat
cctcgcctgacgcgaatgagattttcctctatcctcatcgatgagagcatgcaagccacc
gaacccgagtgcatggttcctgtcgttctaggagctaagcaactcatcctagtcggcgat
cattgccaactcggccccgtggtgatgtgcaagaaagctgccaagggaggactgagccaa
tccttgtttgagcggcttgtcgtgctaggaattcgtcccttgagattggaagttcagtat
cgaatgcaccccgagttatctgccttcccatccaacttcttttacgatggtacactccaa
aatggtgtgagtggcgaagatcgtcggttaaacatcgatttcccttggcctcagccggaa
aaaccgacgttcttttatgcctctactggtcaagaagagattgcgggatcgggaacgtct
tatcttaaccggactgaagcatcaaatgtcgagaagttaaccacaaacttcattaaagcg
ggcataaaatcggaccaaattggaataatcacgccttatgaagggcaaagagcgtacttg
gtgcaattcatgcaatatcaaggtccgcttcactcgaaaatatatcagagcatcgaaatt
gcgagcgtagatgcgttccaaggccgagagaaggatatcatcattatatcctgtgtccga
tccaatgattatcaaggcattggctttctcgcagatccacgaagactgaacgtggcttta
actcgggccaaatatgcggctattgttgttgggaacccgaaagttctggccaagcaattg
ttatggaaccacttattgcaacattacaaagacaatggaatcctagtggaaggtcccatc
aacaacatgaaagtatctcctattcaattcccaaaaccgaagcgcctcaacaacgcattc
aacccagggacccatttcatgaacacctcgacctttaatgctaaggaggctttagccact
ccgttccaagcgtcatcccatccaggaggaggaagtagagccaatagcaaccatcacctg
aacttgggtagaaatggccctcaaaatagctcaagcaacttccatcgtggtcaatatgtg
ggacatgacaatatgaacaccattcaggatgattttggaaaaatgcaagccactcttggt
aacatgcctattcctgtgggcatgtttgtcaacatgtcacacattccaccgcgattcttc
aacaaatctgatcctaggaccaatcattaccgtggacatggaggagcaagtaacacgcaa
tcgagcatgttatcgcaagagggcgatagaacccagaacaacacactgacccaaagcaat
aatttgtctttggcaatgtcacagaacgagtttggatccgatttctctcaaaacgaaatg
tcccaggatgtggggaggaaccgctctaccatggatggatttctttcacaagattccatg
taccagggaccaagatttcactcccaaaattga
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