Tigriopus californicus (tidepool copepod): 131879224
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Entry
131879224 CDS
T09700
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase-like
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tcf01009
]
131879224
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131879224
Enzymes [BR:
tcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
131879224
Protein phosphatases and associated proteins [BR:
tcf01009
]
HAD phosphatases
Fcp/Scp phosphatases
131879224
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
131879224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
BRCT
BSH_Fcp1
FCP1_C
Biotin_lipoyl
BSH_CusB
PTCB-BRCT
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
131879224
NCBI-ProteinID:
XP_059081466
LinkDB
All DBs
Position
4:8940063..8942985
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AA seq
684 aa
AA seq
DB search
MSQVVFKGPAGATFQAWKVRSGTWVAKGQILALTQEPVVDGTPTMGKVRAEQAGKISELC
VKSGHELTIGLVLAQLSSDCPHATLMKDMCADCGADLRLLEESEPGHAQNKSQAAVAMVH
SIPELKVSSKEAESLGQEDEARLLKHRKLVLLVDLDQTLIHTTYETIPKNVKDVYHFQLY
GPRSPLHHTRLRPGTQKFLENISQLFELHICTFGARLYAHTIAGFIDPKSKYFSHRILSR
DECFDNRSKTANLSSLFPCGDHMVCIIDDREDVWNFASNLVQVKPYVFFKSTGDINAPPG
AAPNPKEGSTEAKKPKPAAPTPPNESEVVKPKEDTSMDETSSTAMKPETKGDVKEEGELD
KDKKDEVDPPKEKTEEELVEMDDNDDYLVYLEDILSTIHKAYYDMYDQRNAKKEEQTKTD
PKGKLNLKFVIPYVKRKILQGTNILFSGVVPTHIPLQKSKAYRIARTLGANVLDTVTPES
NITHLIAARIGTAKVNDVRKMKGVHIVTPDWLWCCAERWEKVDERMFPLNKASQVTLKPP
VHCSGGGPDQDLDALESENLPEISNPFLAMSKNDLQGMDDEVNDVLSEDNDDSSSSESEP
TPDGDDDSKLGGEIQYDSENEEVGMHCDDGRRSGKKRKHADVDDDDGDEGSTSSGESDEA
SNDEDELQGMANELEKEFFDQEED
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagtggtgtttaaaggcccagcaggcgccaccttccaagcctggaaagtccgt
tcaggcacttgggtggccaaaggccagatcctggccttgacccaggagcccgtggtcgat
ggcacgcccaccatgggcaaggtgcgggccgagcaagccggaaagatctcggagttgtgt
gtcaaatccggccatgaacttaccatcgggttggtgttggctcaattgagttcggattgc
ccgcatgccaccttgatgaaggacatgtgcgcggattgcggtgcggatttgcgtttactc
gaggagagcgagcccggacatgcgcagaataagagtcaagccgccgtggccatggttcat
agtattcccgagctcaaagtcagttcgaaggaggccgaaagtctcggtcaggaggacgag
gcccgtttgctcaagcaccgaaaattggtattgttggtcgatttggaccaaacgctcatc
cacaccacatacgagacgatcccgaagaatgtcaaggacgtgtaccacttccaattgtac
gggccccgctcaccgttgcatcacacgcggcttcgacccgggactcaaaagttcttggag
aacattagtcagttattcgaactgcatatttgcaccttcggggcccgattgtacgcccac
accatcgctggattcatcgatcccaagagcaaatacttctcccatcgtatcttgtcccga
gacgagtgcttcgacaaccgctccaagacggctaatctctcgtccttatttccctgcggc
gatcatatggtgtgcatcatcgatgaccgggaagatgtgtggaattttgcttccaatttg
gtacaagtcaagccctacgtattcttcaagagtacgggggacatcaacgctccaccgggt
gcggcccctaacccaaaagaaggcagtaccgaggctaagaagcccaagccagccgcacca
accccgcccaacgaatctgaggtcgtaaaacccaaggaggatacatccatggatgagacc
tcttccaccgcgatgaaacccgaaaccaaaggcgatgtaaaggaggaaggtgaattggat
aaggacaagaaggacgaggtggatccaccgaaggaaaagactgaagaggagctggtcgaa
atggatgacaatgacgattatctggtgtatttggaagatatcctttccaccattcacaaa
gcctattatgacatgtacgaccaacgaaatgccaaaaaagaggaacaaaccaagaccgat
ccgaaaggcaaactaaacctgaagtttgtcattccatacgtgaaacgaaaaatcctccaa
ggcaccaatatcctttttagcggcgttgttcccacacatatacctcttcaaaagagcaag
gcttatcgtattgcccgaacgctcggggcgaatgtcttggacacggtgaccccagaatcg
aatatcacccacctaatcgcagcccggatcgggacggccaaagtgaacgacgtacggaag
atgaaaggggttcacatcgtgactccggattggttatggtgttgtgctgagcgttgggaa
aaagtggacgagcggatgtttccactcaacaaagcctctcaagtcaccctcaaacccccc
gtccattgttccggagggggcccggaccaagatctggacgccttagaatccgaaaacttg
cccgaaataagcaacccctttctagctatgtccaagaatgatctccaaggtatggatgat
gaggtcaacgatgtgctctccgaagataacgatgacagtagtagttccgaatccgaaccc
acgccagatggtgatgacgactccaaattgggtggggagatccaatacgactccgaaaat
gaagaggtgggcatgcattgcgatgatgggcgtcgatcgggcaagaaacgaaaacacgcg
gatgtggacgacgacgacggagacgagggatcgactagttcgggcgagtctgacgaggcc
agtaacgacgaggacgagctccaagggatggctaacgagctggaaaaggaattcttcgac
caagaggaagattaa
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