Tigriopus californicus (tidepool copepod): 131879229
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Entry
131879229 CDS
T09700
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131879229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131879229
Spliceosome [BR:
tcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
131879229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
PRP4
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
ANAPC4_WD40
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_IFT140_1st
DUF7614
Motif
Other DBs
NCBI-GeneID:
131879229
NCBI-ProteinID:
XP_059081473
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Position
4:complement(4851485..4852924)
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AA seq
365 aa
AA seq
DB search
MSDSGGDDEERGPRYVKRQKIVHYGSLAEGGHDLRAGPPDGDSPGDHSDHSDNEGGQSNI
EVSKEYLPLNQDDIRGEKDDILEEFERRKRARLIHVSTDDAQVKKDLRALGQPICFFGEG
PAERRNRLRDLLSQLGEDAIQKRKEAEEARAKEQRKQDETTWYHEGPAALKAARQVLAHF
SLPRAQARIGRQKQDIETPESARMARNQEVQKMLKGLDLEASQIADTRPISWCEFSPDSQ
LLATGSWSGLCKLWSVPDCQEVLTLRGHNDHVGNVVFNPKATIDLPKSGPNLASCDSTGH
VNVWSMESSQPLMALPNLESRVSRVAFHPMGLHLAACVYDNSWRMFDLESQEEILHQEGH
SKAVH
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatagcggcggcgacgacgaagagcgaggcccgcgttatgtcaagcgccaaaag
atcgtgcactacggttcgttggcggaaggtggacacgacttgagggcgggtccaccggac
ggcgattcccccggcgatcactccgaccattccgacaatgaaggggggcaatccaatatc
gaggtctccaaggagtatttaccgctcaatcaggacgacattcgcggtgaaaaggatgac
attttggaggaattcgagcgtcggaaacgagcccgactcatccacgtgagcacagacgat
gcccaagtcaagaaagatctgcgggctttgggtcaacccatctgcttctttggtgaaggt
ccggctgaacgacgcaatcgcctccgagaccttctatctcaattgggcgaggatgccatt
caaaagcggaaagaggccgaggaggcgagggccaaagagcagcgcaaacaggatgaaacc
acctggtaccacgaggggcccgctgccctgaaagcggcgcgccaggtcctggcccatttt
tccctgccgcgcgcccaagcccgcattgggcgacagaagcaagatattgagactcccgag
tccgcgcgcatggcccgcaatcaggaagtccaaaagatgctcaagggcttggatctggag
gcgtcacagattgccgacacgcggcccatttcgtggtgcgagttcagtcccgactcgcag
ctgttagccaccgggtcgtggtccgggttgtgcaagctgtggtcggtgcccgactgtcaa
gaggtgctcacactcaggggccataatgaccatgtgggcaatgtcgtgttcaatcccaag
gccaccatcgatctgcccaagtccgggcccaatttggcttcatgcgattccaccggccac
gtgaatgtgtggagcatggaatccagccaacccctcatggctttacctaaccttgaatcc
cgggtgtcccgggtcgcctttcatcctatgggcttacatttggccgcgtgtgtatatgac
aactcgtggcgaatgtttgatttggaatcccaagaggaaattctccaccaggaaggccac
agcaaagcggttcattga
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integrated database retrieval system
