KEGG   Tigriopus californicus (tidepool copepod): 131879282
Entry
131879282         CDS       T09700                                 
Name
(RefSeq) transducin beta-like protein 3
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    131879282
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tcf03009]
    131879282
Ribosome biogenesis [BR:tcf03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    131879282
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_EML WDR55 EIF3I Utp13 Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IP5PC_F Utp12 Beta-prop_WDR19_1st Beta-prop_NWD2_C Beta-prop_RIG_1st Beta-prop_VPS8 Beta-prop_WDR75_1st Beta-prop_WDR19_2nd Ctf4_C
Other DBs
NCBI-GeneID: 131879282
NCBI-ProteinID: XP_059081538
LinkDB
Position
4:complement(11958417..11962454)
AA seq 753 aa
MAPLSSVASMMGPTDATDDATDSDLWRARPWIQGHGQPVTALVGWLDGHLVVAEAGSLRC
LDLNRNLSLSSALTLAPADDPILSLTVHAPSSQIWTAHRSGLIRHSQGPQLTLIRTLKSA
HIGPIPFLAVDAAGSKLASLSVGQSASLRVWDLPAYAGQKAARAPSHHPTAMLLDPAGHL
NVGTVLGPILVYRLDELGRAPQTLERHKSGVAALAANRSCLVAAGRDQILTVWSQDSGTL
VHLIPVFEDIQTLAFSTAGRLTTGGSRGQLRGWDLSSGQEMTTITDLPTLKGRDIKALNF
SAQDELRVWQEDLVFSPDRVQCLFQEPLTDLCLITEGREVVLSTMENALKIMSVESLTVK
VFDTPHQEGVVALAGNASGGRPTFASLGKRREIFVWQRDDQTIEVLAQCVNAAAITQTFL
LDRLLFTGDVDGILKTWALEPDQTEAKTIATTLSHGKEVKAIDVDSNRGLILTASLDKTA
KIWRAEDMQRVAALSGHRRGVIAAKFSHCEPQIISSSLDGAVKIWNIGPYDCARTLEGLL
SPACDLLIHSPKTLISLSLDGAFTIWKTNENAPKLAAYNHHEAQAWKMVQIGDQIISCGT
NNQFLIWDDNTQNIKLKKEQEQTTQIKLMQSLDNALKQGKLDKAVLACLRLKQTRKLHEI
LSNCPNQVRTNLIQRLPSKYLQNFLKFSIHLNQNTRTFLLGQEIFSILIDRGHDLSLLES
AQIYQFLSFSQKHYERVSKELAKVSIVDLLLKI
NT seq 2262 nt   +upstreamnt  +downstreamnt
atggcgcctctgtcttccgtggcgtctatgatggggcccacggatgccacggatgatgcc
acggactcggacttatggcgggctcgcccttggattcaagggcacggccaacctgtgacg
gccttagtgggctggttggacgggcatttagtggtggcggaagcgggcagtctccgctgt
ttggatctgaaccgcaatctgagcctgagttcggccttgaccttggcccccgccgatgac
cccattctcagtctgaccgtgcacgccccctccagtcaaatctggaccgctcatcgttcg
ggtctgattcgtcacagtcaaggcccccaactgaccttaatccgcaccctcaaatccgcc
cacatcgggcccatcccctttctagccgtggatgcggccggctcaaagctggcttcgctc
tccgtgggtcaatcagcttcgcttcgagtatgggatttgcccgcctacgcgggtcaaaaa
gcggctcgcgcaccctcccatcatcccacagccatgctgctggatcccgccggtcatttg
aacgtgggcacggtgctgggtcctattctcgtgtatcgtttggatgagttgggtcgagcc
cctcaaaccttggaacgacataagtcgggcgtggccgcattagcggctaatcgctcgtgc
ttggtggcggcgggtcgagaccagattttgacagtttggagtcaggatagtgggactttg
gtccatctgattccggtctttgaagacatccaaaccttggccttcagtacggcgggtcga
ttaaccacgggcggttcgcgcgggcaattgcggggctgggatttaagttcaggccaagag
atgacgaccatcacggatttacccaccttgaaaggtcgcgatattaaagccttgaatttc
tccgcccaagatgaattacgggtttggcaagaggatctggtgttcagtcccgatcgcgtg
caatgcttgttccaagaacctctcacggatttgtgcttgatcaccgaaggccgggaagtg
gtcttgtccacaatggaaaacgctctcaagatcatgtcggtcgagtctctgaccgtcaaa
gtgtttgacacgccccatcaagagggcgtggtggccttagccggcaacgcctccggcggt
cgtcccacttttgcctccttggggaaacgacgcgagatcttcgtgtggcaacgtgatgat
caaaccattgaagtcttggcccaatgcgtgaatgcagctgccattacgcagaccttcctc
ctcgaccgtctattgttcacgggtgacgtggatgggatattgaagacctgggctttagaa
cccgatcaaaccgaggccaagaccatagccaccactttgtcccatgggaaggaggtcaaa
gccatcgatgtcgactctaaccgagggttgatcttgaccgcttccttggacaagacggcc
aagatttggcgcgccgaggatatgcaacgcgtggccgcactatccggacatcgtcgaggc
gtgattgcggccaagttctctcactgtgaaccccagatcatctcctccagtttggacggg
gcggtcaagatctggaatattggcccctatgattgtgctcgaaccttggaaggattgctt
tcacccgcgtgtgatcttttgatccattcgcccaagacgttgatttcattgtctctagat
ggagccttcaccatatggaagaccaacgaaaatgcacccaagttggctgcctacaaccat
catgaagctcaagcgtggaagatggtccaaatcggggaccaaatcatctcttgtggaacc
aacaatcagttcctcatatgggacgataatacccagaacatcaaattgaagaaggagcag
gagcaaaccactcagatcaagctaatgcagagcttagacaatgctctcaagcaagggaag
ttggataaggcggttttggcctgtttgagactgaagcagacccggaaactccacgagatc
ctgtccaattgcccgaatcaggtgcgaaccaatctgatccaacggctgccgagtaaatat
ttgcagaatttcttgaaattcagtattcacctcaatcagaacactcgcacgttcctcttg
ggacaagagatcttctccattctaatcgatcgtggtcatgacttgagtctcttagaatcc
gctcaaatctaccaatttctatctttttcacagaaacattatgagcgagtctccaaagaa
ctagccaaagtgagcattgttgacctattactaaagatttga

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