Tigriopus californicus (tidepool copepod): 131879315
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Entry
131879315 CDS
T09700
Name
(RefSeq) succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like
KO
K01900
succinyl-CoA synthetase beta subunit [EC:
6.2.1.4
6.2.1.5
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf00020
Citrate cycle (TCA cycle)
tcf00640
Propanoate metabolism
tcf01100
Metabolic pathways
tcf01200
Carbon metabolism
Module
tcf_M00009
Citrate cycle (TCA cycle, Krebs cycle)
tcf_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
131879315
00640 Propanoate metabolism
131879315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tcf04147
]
131879315
Enzymes [BR:
tcf01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.4 succinate---CoA ligase (GDP-forming)
131879315
6.2.1.5 succinate---CoA ligase (ADP-forming)
131879315
Exosome [BR:
tcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131879315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-grasp_2
Ligase_CoA
Citrate_synth_N
ATP-grasp_5
GARS_A
ATP-grasp
Succ_CoA_lig
SDH_alpha
OKR_DC_1_N
Motif
Other DBs
NCBI-GeneID:
131879315
NCBI-ProteinID:
XP_059081587
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All DBs
Position
4:187565..192709
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AA seq
468 aa
AA seq
DB search
MASCLLQRLSGLSCAEKHALAKGLKVVSSAPNSPRRQGASPNLVGGVHHQSVRPLSVHEH
VSMSLLKEAGVPTPKFGVAQTAEAAQQIAADLNVSDLVVKAQVLAGGRGKGYFKKVGKGG
KGGVQLVYNPDEAKVAAQEMIGDFLITKQTGEAGRICNSVMITERKYTRKEFYVAFMNER
AYSGPVMIASAEGGVNIEDVAAKNPDAIHKFPIDIHEGLSLAKAKEAATKLGINASKADE
VAQIFVNLYKMFESKDATMVEINPFAEDSNGTYFCLDAKLRFDDNADFRQKEVFAQRDWS
QEDPSEVEAANHNLNYIALDGDIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGGATAH
QVKEAFKIITSDPKVNAIMVNIFGGIMRCDVIAEGIIEAAKELQLATPIVVRLQGTNVDD
AKVMIGSSGMKILPVDNLDEAARLAVRLSNIVGIAREAHVDVKFEIPI
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttgcttgctacaaagactgtcaggcctctcctgcgccgaaaagcatgcccta
gccaaaggccttaaggtggtgtccagtgcgcccaattcgccccgtcgtcagggcgcctcg
cccaatttggtgggcggggtccatcatcagagtgtgcgccccttgtccgtccacgagcac
gtgtccatgtctttgctgaaggaggcgggtgtacccacgcccaaattcggtgtggctcaa
accgccgaggcagcccagcaaatcgcggccgatctcaacgtgtccgatctcgtggtcaaa
gctcaggttttggcaggtggacgcggcaaaggatacttcaagaaagttgggaaaggcggc
aaaggcggcgttcaattggtttacaatcccgatgaggccaaagtggcggcccaagaaatg
attggcgactttctgatcaccaaacagacgggcgaagctggccggatttgcaactctgtc
atgatcaccgaacggaaatacacgcgcaaggagttctacgtggctttcatgaacgagcgg
gcctattcgggtcccgtgatgattgcctcggccgagggaggcgtgaacatcgaagatgtg
gcggccaagaatcccgacgccatccacaaatttcccatcgacatccatgaaggtctgtcc
ttggccaaggccaaagaggccgccaccaaattgggcattaacgctagcaaagcagatgaa
gtggcccaaatctttgtcaacttgtacaagatgttcgaatcgaaagacgccaccatggtg
gagatcaatccatttgccgaagactcgaatggcacttatttctgcttggatgccaaactc
cgatttgatgacaacgccgatttccgtcaaaaagaagtctttgctcaacgggattggagt
caagaagatcccagtgaggtggaggcggccaaccataacctgaactacatcgccttggac
ggagacattggatgtatggtcaacggagcgggtttggccatggccaccatggacatcatc
aagctccatggcggatctccggccaatttcttggacgtgggcggtggagccacggcacac
caagtcaaagaggccttcaagatcattaccagcgatcccaaggtgaatgctattatggtc
aacatttttggcggcattatgcgttgtgacgtcattgccgagggtatcatcgaagcagcc
aaggagcttcaattggccacgcccattgtggttcgattgcagggtaccaatgtggacgat
gccaaagtgatgattgggtcttctggcatgaagatcttgcccgtggacaatctggacgaa
gcggctcgtttggccgtgaggctctcgaatatcgtgggcattgcccgagaggcccatgtg
gatgtgaagtttgagattcccatctga
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