Tigriopus californicus (tidepool copepod): 131879760
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Entry
131879760 CDS
T09700
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131879760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131879760
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131879760
U7-dependent histone pre-mRNA processing factors
131879760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
131879760
NCBI-ProteinID:
XP_059082157
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Position
1:complement(13039883..13043103)
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AA seq
761 aa
AA seq
DB search
MTSIIKFRPLSGGMMPAQSALSPPHAYLLELDQFTFLCDCGWNAQFDMAFMHELKAVVHK
IDAVLLSYPDMSHLGGLPYAVSQLGLSCPIYATVPIYKMGQMFMYDLYQARFNMEDFQLF
SLDEVDKTFEMITQLKYNQTVQLRGKGEGIAITPMPAGHMIGGSLWKIVKEGEEDIIYAV
DFNHKKEQHLNGSEIEKIQRPSLLITDAFNASYKQVRRRDRDEKLMTSILQTLRNKGNVL
VCVDTAGRVLELAHMIDHLWQIQDSGLIAYSLALLNNMSFNVIEFAKSQIEWMSDKLMRN
FEGRRNNPFQFKHLKLCHSIAEVNKVPSPKVVLASMPDLECGFSRDLFLSWCGKPQNNII
ITSRTGEGTLAHDLVANGTNRTINLEIKKRVKLSGAELEEHKRVEREKAAAVAKAKKQNN
ELLIDDESSDEEMDTGGPVKHDIIMKVDAAKENNQSTTFFKTVKAKHMMFPLTEEKVKWD
DYGEIIRPEDWMDTVIDPDPIKNPATNGRTNSFEYEDTKDIVEIPTKCISSVQRVQLKAQ
IHFIDFEGRSDGESIVKVLQQVKPRRLILVRGREDQCLALANQCRQLWAKAQESSGQTQQ
KVNIYTPKNGETVDATTESYIYQVRLPESLVSRLSFSKGKDGLLAWVDGKISFNQEEIAD
VQSEDAEEVKKKPAIPTLVPLCEGDISGHPSVFVNELKLSDFKIVLTKSGISSEFAGGVL
FCGNGNVALRRHDSGRVTIEGTVCDEYYRVRELLYDQYAIV
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgatcatcaagttccggcctttgtcgggtgggatgatgcccgcccaatcggca
ctgagcccgccgcacgcctacctgttagagctggatcagttcacgttcctgtgcgattgc
ggctggaacgcccaattcgacatggccttcatgcacgagctgaaagccgtggtccacaaa
atcgatgctgtgttactctcgtatccggatatgagccatttaggcgggctaccctacgcc
gtgtctcaattaggtctgagttgccccatttacgcaacagtgcccatctacaaaatgggt
caaatgttcatgtacgacttgtatcaggcccgattcaacatggaagattttcaactcttt
tccttggatgaagtcgacaagacgttcgaaatgatcacgcagctcaaatacaaccaaact
gttcagttacgaggtaaaggcgaaggcattgccatcacgcccatgcctgctggccacatg
attggcggcagtctctggaagattgtcaaggagggcgaagaggacatcatctacgccgtg
gacttcaaccacaaaaaagagcagcatctcaatggcagcgagatcgagaagatccaacgc
ccctccttactcatcacggatgctttcaacgcctcttacaagcaggttcgtcgacgagat
cgggatgagaaactcatgaccagcattctgcagaccctccgcaacaagggcaatgtgttg
gtctgtgtagacacggctggacgggtgttggagttagcccacatgatcgatcatctctgg
caaatccaggactctggccttatcgcttattccttggccttactcaacaatatgagcttc
aacgtgatcgagttcgccaagtcgcaaattgagtggatgagcgacaaactcatgcgcaac
tttgaaggtcgacgcaacaacccttttcagttcaagcacttgaaattgtgtcattccata
gccgaggtcaataaggttccgtcgcctaaagtggtcttggccagtatgcccgaccttgag
tgcggcttttctcgggatctgttcttgagttggtgcggcaaacctcagaacaacattatc
atcacgtcacgcacgggcgagggcactttggcccatgatttggtggctaatgggaccaat
cggacgatcaatttggagatcaagaagcgggtcaagttatctggagcagaattggaagag
cataaacgggttgaacgggagaaagctgcggcggtggccaaggccaagaaacagaacaac
gagttactgattgacgacgagtcttcggatgaggaaatggacacaggaggacccgtgaag
cacgatatcatcatgaaagtggatgcagccaaggagaacaatcagagcacaaccttcttc
aagacggtcaaggccaaacatatgatgttccctcttacggaagaaaaggtcaaatgggac
gactatggagagatcatccggcctgaggattggatggacacggtgatcgatccggatccg
atcaagaatcctgccacgaatggccgtaccaactcattcgagtacgaagacaccaaagat
attgtggaaatcccaaccaaatgcatatccagtgtacaacgcgttcaactcaaggcccaa
atccatttcatcgacttcgaaggtcgctccgatggcgaatccatcgtcaaagtgcttcag
caagtcaaacctcgtcgtctgattttagtgcgagggcgtgaggatcaatgtctagctttg
gctaaccaatgccgacaattatgggctaaagcccaggaaagttccggtcagactcaacaa
aaggtcaatatttatactcccaaaaatggcgaaaccgtcgatgccaccaccgagtcctac
atttaccaagtccgtttgcccgaatccttggtcagtcgtctgtccttcagtaagggcaaa
gatggccttttggcttgggtggatgggaagatctcgtttaatcaggaagaaatcgccgat
gtccagtctgaagacgccgaggaagtcaaaaagaagccggctatcccgacccttgtcccg
ttgtgtgaaggggacatctcgggacatccaagtgtgtttgttaatgagttgaagttatca
gatttcaagattgtattgaccaagagtggaatctcatcagaatttgccggaggcgtactt
ttctgtggcaatggcaacgtggccttgcgcagacatgacagtgggcgtgtcaccattgaa
ggcacagtttgtgacgagtattatcgcgttcgagagctcttgtacgatcagtatgccatt
gtctaa
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