Tigriopus californicus (tidepool copepod): 131879783
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Entry
131879783 CDS
T09700
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
tcf03015
mRNA surveillance pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131879783
09122 Translation
03013 Nucleocytoplasmic transport
131879783
03015 mRNA surveillance pathway
131879783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131879783
03041 Spliceosome [BR:
tcf03041
]
131879783
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131879783
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131879783
Spliceosome [BR:
tcf03041
]
Complex C
Other components
EJC/TREX
131879783
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131879783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131879783
NCBI-ProteinID:
XP_059082181
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All DBs
Position
4:6802988..6806813
Genome browser
AA seq
432 aa
AA seq
DB search
MADVDTELLDYEEEEQTETPNEASAANGANGTAVAKKDAPKGNYVSIHSSGFRDFLLKPE
ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVC
VLVMCHTRELAFQISKEYERFSKYMTGVKCAVFFGGLAITKDEQVLKSNCPHIVVGTPGR
ILALVRSKKLSLKHLKHFILDECDKMLEQLDMRRDVQEIFRATPHEKQVMMFSATLSKEI
RPVCKKFMQDPMEMYVDDEAKLTLHGLQQHYVKLKDSEKNRKLFELLDVLEFNQVVIFVK
SVQRCVALAQLLIEQNFPAIAIHRGMSQEERLSRYQQFKDFQKRILVATNLFGRGMDIER
VNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDESDAKVLNAVQDRFEVDITELP
EEIDLSSYIEGR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgtggatactgagcttttggattacgaggaagaggagcaaaccgagacgccg
aatgaggcctcggcggctaatggggccaatgggacggccgtggccaagaaggacgcgccc
aagggcaattacgtgtctattcattcctcggggttccgggatttcctcttgaagcccgaa
attctgcgcgccatcgtggattgcggtttcgagcatccttctgaagttcaacacgaatgt
atccctcaggccgttctgggcatggatattttgtgccaggccaagtctggtatgggtaaa
accgcagtgtttgtgctggctacgcttcagcagatcgagcccgtggacggacaagtgtgc
gtgttggtcatgtgccatactcgggaattggctttccagattagcaaggagtacgagcga
ttctccaagtacatgacgggagtcaagtgtgccgtgttttttggtggtctcgccatcacc
aaggatgagcaagtgctcaaatcgaactgcccgcatatcgtggtgggtacacctggtcga
attttggctctggttcgcagcaagaaactcagcttgaagcatctcaagcatttcatcttg
gatgagtgcgataagatgttggagcagctggatatgcggcgcgacgtccaggaaattttc
cgggccacacctcacgagaaacaggtcatgatgttctccgctaccctttcgaaggaaatc
agacctgtgtgcaagaaattcatgcaagaccccatggaaatgtacgtggatgacgaggct
aagctcaccttgcacggtcttcaacagcattacgtaaagctaaaggattccgagaagaac
cgaaagttgtttgaattgctcgatgtcttggagttcaaccaagtggtcatcttcgttaag
tctgtacaaagatgtgtggccttagctcaacttttgattgagcagaacttccccgccatt
gcaattcaccgtggaatgagtcaagaggagagactgtccagatatcaacaattcaaagat
ttccaaaagcgaattttggtcgccaccaacttattcggccgaggcatggacattgagcgt
gtcaacatcgtgttcaattacgacatgcccgaagatacagacacgtacctacatcgtgtg
gcccgggctggccggtttggtaccaagggtttggccatcacgttcgtatcggatgagagc
gatgccaaagtattaaacgctgtacaagatcgctttgaagtggacattactgaactgccc
gaggaaattgatctctcttcttacatagaggggcgctga
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