Tigriopus californicus (tidepool copepod): 131879845
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Entry
131879845 CDS
T09700
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
KO
K17642
ATP-dependent RNA helicase DDX3Y [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131879845
03041 Spliceosome [BR:
tcf03041
]
131879845
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131879845
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131879845
Spliceosome [BR:
tcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131879845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
131879845
NCBI-ProteinID:
XP_059082277
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All DBs
Position
4:4044359..4047638
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AA seq
726 aa
AA seq
DB search
MNSGSLQNGGGRLEHSEGVLSSDNPTAHSGESGGGGNSGRGAQQSNTPKSRYVPPHLRGR
GGGAPAGGGPDSDGDFGRNGGDRGSRGGGRWNDDRGGRGGGGGGGGGYSDRGFNNRWSTT
SEFGRGGRGGPGGGGGGGSWGGSGGGGGGRWNDDRGGDRYGSRGGGGGRYDNRGGSNGGG
GGQSEDWLSPLPRNERLELELFGGGHGPSGINFDRYEDIPVDASGNDAPPGIEDFSQVEL
TPIIAANIESAHYTKPTPVQKHAIPVILNERDLMACAQTGSGKTAAFLIPILHRLLVCGP
VTGAQSFGGYSSRRKQFPLALVLAPTRELATQIFDEARKFSYRSRARPCVVYGGANVADQ
MRDLDRGCHLLVATPGRLVDMLDRGKISLEYCKFLVLDEADRMLDMGFEPQIRRIVEENN
MPPTGDRQTLMFSATFPKEIQMLARDFLHDYIFLTIGRVGSTSENITQKIVWVEESDKKS
FLLDLLDAAGLNNSEAAPEDASLTLVFVETKKGADYLDDYLYKVGFPVTSIHGDRTQKER
EEALRCFKSGRSPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGL
ATSFFNDKNRNLVKELVDLIVESNQDLPNWLEALAMENRSSWGGGGNRRGRGGRNNFSSR
DYRMDSRSGGGGGGGGGGGGGRPNRGGGGGFGGGSRGWQGPPGASNDYGGNYGSGGGGGG
NHIDWW
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggatccctacaaaatggaggaggacgtttagagcactcggaaggtgttctg
agctccgataatcccacggctcattccggcgaaagcggcggcggcggcaactccggccgt
ggcgcccagcaaagcaatactcccaagtcgcgttacgtaccgcctcacttgagaggacgt
ggaggcggcgctcccgcaggaggtggacccgattccgacggtgactttggacggaacgga
ggcgatcgcggatcgcgaggcggtggccgttggaacgacgaccgcggcggacgtggtggt
ggtggtggtggcggcggtggctacagcgatcgcggcttcaacaaccggtggtctaccact
agtgaattcggtcgcgggggtcgtggtggacccggcggcggcggtggtggtggttcttgg
ggcggtagtggcggtggcggcgggggacgatggaacgatgaccgcggtggtgatcgatac
gggtctcgtggaggcggcgggggtcgctacgacaatcggggtggttcgaacggcggcggg
ggtggccaatccgaagactggctctcccccttgcctcggaatgaacgcctcgagttggaa
ctctttgggggcggccatggcccgtcgggcatcaactttgaccgttacgaggatatcccc
gtggacgccagtgggaacgatgcccctccgggcattgaagatttctcccaagttgagctg
accccgatcattgcggccaatattgagtccgctcattacaccaaacccactcccgttcag
aaacacgccatcccagttatattgaatgagcgagatttgatggcttgcgctcaaactgga
agtggcaagacggccgcatttcttatccccattcttcatcgcctccttgtgtgcggcccg
gtcactggtgcccaatcgttcggcggttactcaagtcgtcgcaagcaatttcctttggct
ttagttttggctcccactcgtgagttggccacacagatcttcgatgaagctcgcaaattt
agttaccgttcccgcgctcgcccttgtgtcgtctatggcggtgccaacgtcgctgatcag
atgcgagatttggatcgcggatgccatttgttagtggctacgcccggacgtttggtggac
atgttggaccgaggcaagatctccttagagtattgcaagtttttggttttggatgaagcc
gatcgtatgttggatatgggtttcgagccccaaatccgtcgcattgttgaggagaacaat
atgccccccactggagatcgtcagactctcatgttcagtgctacgtttcctaaggaaatt
cagatgctcgctcgtgactttttacacgactacattttcttgaccattggtcgcgtggga
tccacgtctgaaaatattactcagaagattgtctgggttgaagagtcggacaagaagtca
tttctattggatttgctcgatgctgctggactcaacaacagtgaggctgcaccggaagac
gctagtttgacgctggtttttgtcgaaacgaaaaaaggtgccgattacttggacgactac
ttgtataaggtgggcttcccggtgacttctattcacggagatcgaacccaaaaggaacgt
gaagaggcccttcgctgttttaaatcaggtcgaagtcccattctagttgccactgctgtc
gctgctcgtggtttggacatccccaatgtcaagcacgtcatcaacttcgatctaccctct
gatgtggaagagtacgtccatcgaattggacgaactggtcgtatgggaaacctaggcttg
gccacatccttcttcaacgacaagaatcgcaatctcgtgaaggagctggttgacctgatc
gtggaatcgaatcaagatctccccaactggttggaggccctggccatggagaatcgctcg
tcttggggcggcggaggcaaccgccgcggtcgtggtgggcgtaacaacttttcttctcgc
gattaccgcatggattcgcgcagtggtgggggaggagggggcggcggcggcggtggaggg
ggtcggccgaatcgaggcggtggtggaggctttggcggtgggtcccgcggatggcaaggt
cctccgggtgccagcaatgactacggtggaaactacggctcaggcggcggaggtggtggt
aaccacattgattggtggtaa
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