Tigriopus californicus (tidepool copepod): 131879916
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Entry
131879916 CDS
T09700
Name
(RefSeq) E3 ubiquitin-protein ligase RNF126-B-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131879916
04121 Ubiquitin system [BR:
tcf04121
]
131879916
Enzymes [BR:
tcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131879916
Membrane trafficking [BR:
tcf04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
131879916
Ubiquitin system [BR:
tcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131879916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
Zn_ribbon_19
zf-C3HC4_2
zf-RING_5
zf-C3HC4
zf-rbx1
zf-C3HC4_3
zf-RING_UBOX
zf-ANAPC11
zf-RING_Vps41
HypA
SOG2
zf-RING_6
zf_RING-like
Pex19
Motif
Other DBs
NCBI-GeneID:
131879916
NCBI-ProteinID:
XP_059082391
LinkDB
All DBs
Position
4:4266017..4270772
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AA seq
374 aa
AA seq
DB search
MSSFYCHECSQRFTLTNSDSVNFQCPHCQSGFIEECEDLAPMGGFMDEADGPEDPNQRVQ
MSAENFIRQLLGPMMMGAAGPMGPREGGPRFTVREFPPRGAEGGGALPGLGMEGQNFLHD
LIHNLAGVDGGERGAPHFHFMPANMGAGMTLYGNPGDYAWGRGGIDAIVTQLMNQMEEAG
PPPMKTEDIQQLPTVEIAAQHLEEKSQCSVCWEDFKPKEQVKQLKCDHLFHDNCIIPWLE
LHDTCPVCRKSQREMDKDASGGQMDTSDQTGNQPSAEGVSQSGSNPSGAILPRFLSSVYD
LVGGGSSNQRGRSTANGERPSTSSTSESTTSATHSTPSSSSSSSSQSQTTTSNPQSSASH
RPSSGAEYQDFDLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgttttactgtcacgaatgctcccaacggttcacactgaccaattcggattcg
gtgaacttccaatgccctcattgtcaatcgggcttcatcgaagagtgtgaagatttggct
cctatgggaggattcatggatgaagctgacggccccgaagaccccaatcaacgagtacag
atgtctgcggaaaacttcattcgtcaactactcggtcccatgatgatgggtgcagcaggt
ccaatgggtccgcgggaaggtggacctagattcactgttagggagtttcctcctcgtggt
gccgagggaggtggagctctacctggtttaggaatggagggccagaattttctccatgat
ctcatccataacttggcgggagtcgatggaggtgagcgtggcgcccctcatttccacttc
atgcccgcaaacatgggagcgggtatgacactttacggcaatcctggagactatgcgtgg
ggacggggtggaatagatgccattgtgacccaattgatgaatcaaatggaagaggcaggt
ccacccccaatgaaaactgaagacatacagcaactcccaacggtagaaatcgccgctcag
cacctcgaagagaaaagtcagtgctctgtttgttgggaagatttcaaacccaaagaacaa
gtgaagcaactcaaatgtgatcaccttttccatgataactgcatcataccttggcttgaa
ctccacgatacctgtccagtttgtcgaaagtcgcaacgtgaaatggataaagatgcatct
ggtggacaaatggacacctcagatcaaactgggaaccagccttcggcggaaggcgtgtcg
cagtcagggtcaaacccgagcggggccatactaccgaggttcttatcgtcggtttacgac
ttagtcgggggcgggtcgtcgaatcaaagaggtcgttcgactgcgaatggtgaacgccca
tctacgtcgagcacgtcagaaagcacgacctctgccacacattcaacgccttcttcttca
tcttcatcttcatcgcaaagccaaacaaccacctcgaaccctcaaagctcagcttctcat
cggccttcctctggggccgaatatcaggattttgacctagaataa
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